7000000584: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023

Overview

Basic Information

• IMG/M Taxon OID: 7000000584
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053149 | Ga0031114
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 201559186
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F054110	Metagenome	140	N
F063778	Metagenome	129	Y
F066860	Metagenome	126	N
F071327	Metagenome	122	N
F076191	Metagenome	118	N
F085821	Metagenome	111	N
F095630	Metagenome	105	N
F101360	Metagenome	102	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C6498818	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1173
C6501576	All Organisms → Viruses → Predicted Viral	1218
C6525583	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2043
SRS049318_LANL_scaffold_114218	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	7217
SRS049318_LANL_scaffold_139313	Not Available	674
SRS049318_LANL_scaffold_147580	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	779
SRS049318_LANL_scaffold_150512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	36989
SRS049318_LANL_scaffold_158625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2131
SRS049318_LANL_scaffold_178615	Not Available	3215
SRS049318_LANL_scaffold_179743	Not Available	22334
SRS049318_LANL_scaffold_184817	All Organisms → Viruses → Predicted Viral	2532
SRS049318_LANL_scaffold_62847	All Organisms → Viruses → Predicted Viral	1381
SRS049318_LANL_scaffold_89940	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1389

Sequences

Scaffold ID	Protein ID	Family	Sequence
C6498818	C6498818__gene_379637	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK
C6501576	C6501576__gene_380245	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKAYKGGD
C6525583	C6525583__gene_385870	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTSGIAEDREETTEDVAI
SRS049318_LANL_scaffold_114218	SRS049318_LANL_scaffold_114218__gene_153040	F051213	MNLYKILGALILALSFVFTSCDWVANEPTIEGNIDKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLPNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFATRNNRYQAHRPNMIIMQFAK
SRS049318_LANL_scaffold_139313	SRS049318_LANL_scaffold_139313__gene_191142	F085821	MNHIFEQLAPLAETKKQQTTIAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCLDYLVAQGYPTAENKKQFLNWVFMEPIYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTQSQQELIAETQSHIALLK
SRS049318_LANL_scaffold_147580	SRS049318_LANL_scaffold_147580__gene_203984	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLN
SRS049318_LANL_scaffold_150512	SRS049318_LANL_scaffold_150512__gene_208553	F076191	MKITAESPAEIALMWRIKALSDELVNQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPTTCIRSAHDNQELKDVIHLLILAGGNEIPNNHYGSLSNA
SRS049318_LANL_scaffold_158625	SRS049318_LANL_scaffold_158625__gene_221820	F063778	LLQQLQDALGLVKDADTSTRDVAAITHSAANGHQLTEVMLQQMTAARGYLKSCADQIEYAISSIKAIPLDPPPED
SRS049318_LANL_scaffold_178615	SRS049318_LANL_scaffold_178615__gene_257836	F022002	ISGFTLGVTTPAQARAIIQRQGGKIISAEGTQAGSDDGFYAVTGLKYARRSTLTAGLYFYKGYLRKIAFLFDKLDVLELIESELENKYGMMAEGKETSKMKSKVIFDAFTSLEVVRRFEYEGHVGFDHAYIAYTDEELNRARSAEKESEI
SRS049318_LANL_scaffold_179743	SRS049318_LANL_scaffold_179743__gene_260251	F105378	MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFIRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR
SRS049318_LANL_scaffold_184817	SRS049318_LANL_scaffold_184817__gene_272728	F018385	MADLINSWLPYQELSIEKDRDPVTDDEIIYGNHVKHFTLTVCSPEGRVSKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFSHDGLNELVFMPDSRRRTVSQLSFDHVPMKEVK
SRS049318_LANL_scaffold_62847	SRS049318_LANL_scaffold_62847__gene_79514	F101360	VSKKSAARRAAIAAHIAKVASQEKKKALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVTWLEWNKPDAVHKVPAPWFTAAAALDGFIKQPGEVPDGVEVVQGDPRISVRISSTQEEAIRDLISTGDISLLTLEGGD
SRS049318_LANL_scaffold_89940	SRS049318_LANL_scaffold_89940__gene_117645	F095630	MIYSSLYKTVENNGLLAHIYEHLLAQYVMKALQRRGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGDAALRVAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRVPYIKYSRKSKSLFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCNNLQAALVRCSHNYEQVLLGRDTLNSILGGCVVGGRGWLEMADNTLIGQILKAIEIDVY