7000000575: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159814214

Overview

Basic Information

• IMG/M Taxon OID: 7000000575
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053140 | Ga0031041
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159814214
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 205692047
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F084362	Metagenome	112	N
F089056	Metagenome	109	N
F095630	Metagenome	105	N
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C5157614	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	520
C5165951	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	535
C5180511	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	563
C5259890	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	831
C5274622	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	929
C5288310	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1049
C5328778	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2057
SRS017227_Baylor_scaffold_108201	Not Available	542
SRS017227_Baylor_scaffold_113369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	9951
SRS017227_Baylor_scaffold_140357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	610
SRS017227_Baylor_scaffold_157348	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1558
SRS017227_Baylor_scaffold_165812	Not Available	5218
SRS017227_Baylor_scaffold_42490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	879
SRS017227_Baylor_scaffold_48675	Not Available	944
SRS017227_Baylor_scaffold_80226	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3290

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5157614	C5157614__gene_318771	F051213	MKASKFLWAVVMALTFVLTSCDPFSKNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
C5165951	C5165951__gene_321060	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLKRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGI
C5180511	C5180511__gene_324906	F089056	VFLKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVITFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
C5259890	C5259890__gene_346179	F033081	MAWLFRRAMPRDTRPTFVWPNLARAIGDARYFDQRWLTAIATVLIIVTIATIKVLLMIPGLDSSVVELLTSIFETFLPARWATGAAWFVGAAGVFLIGDFTNYTSSQRSLHNAKATRCEAYNMLLLFALLEEQAFRSGSEKWSWRERARASVCFGLLHITNIWYSLAAGVALSATGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAVAAVAYLVINIAKML
C5274622	C5274622__gene_350184	F095630	VYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFILSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAVIVMQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKRIASQLKSEFTAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRG
C5288310	C5288310__gene_354002	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYNIDPSIDIGLAPTLPIAHWDSTSNTATMVSLKHLRIYRPHSLHERILSRLRRNLFRDNPKEFYTEIDKWLADTRAHHSS
C5328778	C5328778__gene_365479	F095630	MIYSSLYKTVENNGLIAHIYEHLLAQYVMKYLQSRGFFISSDIILTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDKWDIPGSAALRAAAECGIEMNRAVTELVQDELLHKLSVVQSSAWRQQSDITYRQADGKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPIDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKCEFMEYVQFLSASSFCNNLQAALVRCSHNYEQV
SRS017227_Baylor_scaffold_108201	SRS017227_Baylor_scaffold_108201__gene_139692	F055792	QEEIDEVDDATERERLHRTSYAFTLSLFVERQSMEIASQTLDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQR
SRS017227_Baylor_scaffold_113369	SRS017227_Baylor_scaffold_113369__gene_147065	F097526	MPKSLSGWKAMTKGFIPGAGDMTADNTTAIAPYTQDGYRQICERIGDDTVAALLHAHIRAFAADGNRALLRRLTDAMRIAAEFEQACRNEHPDPTEQERRARWDSNLAVLQQHTRMAHCEIVNADNAAVSLLTQQCEKNGSRDTAIPLSRDDYGFAAALSDLPLNTTQIALLWRMAVLTIAEITETAPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRHTARCEPESAAVMPAAVPEPVVTLQAAEQSEITNHNSTTGAPL
SRS017227_Baylor_scaffold_140357	SRS017227_Baylor_scaffold_140357__gene_188301	F063778	GAKQQLLQQLQDALGLVKDADTSTHDVAAITHSAADGHPLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED
SRS017227_Baylor_scaffold_157348	SRS017227_Baylor_scaffold_157348__gene_218706	F051213	MGIYEQGAGGDLSGGYTYTCKRKPFARRTGMHRYSCLAKQIHLMNLYKILGALILALSFVFTSCDWVGNEPTIEGDRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIIGITQLDSDTFFTKKVDTLSNGDLKISHDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPDMIVTQRAK
SRS017227_Baylor_scaffold_165812	SRS017227_Baylor_scaffold_165812__gene_239309	F084362	MSLMNCTFTVRWSDEKNKPHTKTYATEADAKRAKKWLLEHGVRDVDIAVKINNKPAGRLKDDKPSETEAEQKGFWWEK
SRS017227_Baylor_scaffold_42490	SRS017227_Baylor_scaffold_42490__gene_50730	F064818	PKLYFTKHKFIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNTEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
SRS017227_Baylor_scaffold_48675	SRS017227_Baylor_scaffold_48675__gene_58724	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYEGCPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAEKENEI
SRS017227_Baylor_scaffold_80226	SRS017227_Baylor_scaffold_80226__gene_100819	F040149	IPVLFVEVEAWYDGRVSSSEILRSVGVALERETRLAPVWSHDSKDAIHDFIYDTSIPKGHTLTAVRERETVVAQLLNIHRYVYYP