7000000565: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 338793263

Overview

Basic Information

• IMG/M Taxon OID: 7000000565
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053130 | Ga0031336
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 338793263
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52664156
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F051210	Metagenome / Metatranscriptome	144	Y
F054110	Metagenome	140	N
F067846	Metagenome	125	Y
F077404	Metagenome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2921109	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1435
SRS052227_LANL_scaffold_25980	Not Available	525
SRS052227_LANL_scaffold_3623	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	123906
SRS052227_LANL_scaffold_38464	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1372
SRS052227_LANL_scaffold_47724	All Organisms → Viruses → Predicted Viral	4862
SRS052227_LANL_scaffold_5343	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2206

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2921109	C2921109__gene_104165	F077404	MVQQIIITRRLVGAALSLKEPTQIGNTKNPFAMNILKTVFAFFFALCFMMGANSYAQKTECINAEASKRELKRNAVYLPPALEEYTDTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRIQKR
SRS052227_LANL_scaffold_25980	SRS052227_LANL_scaffold_25980__gene_27367	F067846	MSIIEEWERQEFNKWDRQCSKEDDYNRAVEMEIESIKENIANCDDDVICVFREKMLDYDDVINTFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
SRS052227_LANL_scaffold_3623	SRS052227_LANL_scaffold_3623__gene_1738	F051210	MNNYSQILGNSAMMDALRASSVSAEDARLRGNEYAKMFSRNEEMMDVFGLGGNNANLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRSVLPNLGPDQYQDVQVMGGFELPVTVNAGTAAYSPLVGRKLIPGTVRVKVEDGTGKKYELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAVPSNGTITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQIALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINFKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
SRS052227_LANL_scaffold_38464	SRS052227_LANL_scaffold_38464__gene_44812	F040149	VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSKDAIHDFIYDTSVPKGHTLTAVRER
SRS052227_LANL_scaffold_47724	SRS052227_LANL_scaffold_47724__gene_59747	F054110	VNYQPTIKKLLKALQINGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKTYKGGE
SRS052227_LANL_scaffold_5343	SRS052227_LANL_scaffold_5343__gene_3684	F045567	MCQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKE