7000000564: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764649650

Overview

Basic Information

• IMG/M Taxon OID: 7000000564
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053129 | Ga0031259
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764649650
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 87146945
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F054110	Metagenome	140	N
F055792	Metagenome	138	N
F063777	Metagenome	129	N
F064819	Metagenome	128	N
F067846	Metagenome	125	Y
F081454	Metagenome	114	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2970533	All Organisms → cellular organisms → Bacteria	768
C2980436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	878
C3019029	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	7137
C3019345	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	9391
C3019455	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	10490
C3019667	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	16401
C3019717	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	23864
SRS016225_WUGC_scaffold_13078	All Organisms → cellular organisms → Bacteria	3025
SRS016225_WUGC_scaffold_23913	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1017
SRS016225_WUGC_scaffold_25884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	909
SRS016225_WUGC_scaffold_31417	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057	23899
SRS016225_WUGC_scaffold_4054	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	591

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2970533	C2970533__gene_123793	F047508	HIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
C2980436	C2980436__gene_129589	F067846	MSIIADWERQEFNKWDKQCSKEDDYNRAIEMEIEAIKENISNCDDDVICAFREKMFDDDDFVKAIALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGFVLND
C3019029	C3019029__gene_161624	F064819	MILKDNQGKDRIKFSNIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRDLKDLCECKIRKFFFQNIDETIEIVFSINDIGAIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQELKKYK
C3019345	C3019345__gene_162614	F063777	LKVLNIKFSALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFDKKTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEITISE
C3019455	C3019455__gene_162906	F081454	MKTFKLILLLFIASASLVFGQEKRYFFKYEYHPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESTFSTQKKQDNKIPFVLEYTDYIFEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILVESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK
C3019667	C3019667__gene_163821	F089056	MVLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNKILFGKGIQ
C3019717	C3019717__gene_164169	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMLEIMKLARILDLPLKAYFK
SRS016225_WUGC_scaffold_13078	SRS016225_WUGC_scaffold_13078__gene_13657	F040149	VADEGAEELRWEVLIKEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHNSEDAIDYFIYDRFVPKGHTLTAVRERETVVAQLLNIHRYVYYP
SRS016225_WUGC_scaffold_13078	SRS016225_WUGC_scaffold_13078__gene_13658	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCTLEEVRPVFVDESDDGTEAGTTWSRHPLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIEPVALPDVTRLDESIALQGIGSLRDLLMTPDVSETDHLQTSREEGTDLLQLMSIIARKYQLFHTFVS
SRS016225_WUGC_scaffold_23913	SRS016225_WUGC_scaffold_23913__gene_25844	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDARPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWTVGMAGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAIVLAIDITKLL
SRS016225_WUGC_scaffold_25884	SRS016225_WUGC_scaffold_25884__gene_28175	F054110	LLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKSKQLYKKESEYSSTKQHEVLLFLVKAYKGGE
SRS016225_WUGC_scaffold_31417	SRS016225_WUGC_scaffold_31417__gene_37238	F105376	MNEKPEVSAKEFGALEADVRHIKESVDRHTTTLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTQVRRK
SRS016225_WUGC_scaffold_4054	SRS016225_WUGC_scaffold_4054__gene_4269	F045567	PLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPIDRDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATINEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR