7000000550: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 158883629

Overview

Basic Information

• IMG/M Taxon OID: 7000000550
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053108 | Ga0031350
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 158883629
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129314517
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4
Not Available	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046433	Metagenome	151	N
F054110	Metagenome	140	N
F080166	Metagenome	115	N
F085820	Metagenome	111	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095631	Metagenome	105	N
F095633	Metagenome	105	N
F099453	Metagenome	103	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3691504	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	9451
C3692076	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	19299
SRS075404_LANL_scaffold_25661	Not Available	837
SRS075404_LANL_scaffold_50247	All Organisms → Viruses	6330
SRS075404_LANL_scaffold_66156	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1124
SRS075404_LANL_scaffold_69137	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5484
SRS075404_LANL_scaffold_69749	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8246
SRS075404_LANL_scaffold_70262	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	11493
SRS075404_LANL_scaffold_7521	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1147
SRS075404_LANL_scaffold_9994	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae	917

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3691504	C3691504__gene_221119	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGSNGNISYKDSIYFRIKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARKNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIDLVHKDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
C3692076	C3692076__gene_222886	F092232	MNTQAKFIAEYNDKNRPKFNDKFFNKSDDNIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTASSAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLDKFNFEDVIKISDHDLNDPEYYTFAIANAHMKMPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHVKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDENFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPAAVAFDADLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV
SRS075404_LANL_scaffold_25661	SRS075404_LANL_scaffold_25661__gene_29303	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKP
SRS075404_LANL_scaffold_50247	SRS075404_LANL_scaffold_50247__gene_58771	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKAYKGGD
SRS075404_LANL_scaffold_66156	SRS075404_LANL_scaffold_66156__gene_81764	F033081	MAWLFRRAMPQDTRPTFVWSRLVAEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATTTAWTVGVAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTILLLALLEEQAFRSGSEKWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
SRS075404_LANL_scaffold_69137	SRS075404_LANL_scaffold_69137__gene_88443	F092229	MSENYRFEHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPVVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLEEYREEGKFIYGTKEYKILKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG
SRS075404_LANL_scaffold_69749	SRS075404_LANL_scaffold_69749__gene_90699	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTISYMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY
SRS075404_LANL_scaffold_70262	SRS075404_LANL_scaffold_70262__gene_93358	F099453	MLRRKDMNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLTNLTNVIYTHKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA
SRS075404_LANL_scaffold_70262	SRS075404_LANL_scaffold_70262__gene_93360	F080166	VNILANFENYNKVVEQIFELNYYITFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTIIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLK
SRS075404_LANL_scaffold_7521	SRS075404_LANL_scaffold_7521__gene_8515	F046433	MIELSTSPDALSELSPVAPPKLLSQAQDASRGNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIEMIKHYLPDYMENCAKELIDELAFLGMPELNFAANALAKRLRRHLEVNNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIGKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASRDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGKNFDGLSRFRQLLEKE
SRS075404_LANL_scaffold_9994	SRS075404_LANL_scaffold_9994__gene_11381	F095633	MRNYENFTKVGRGEGLTEGELRTMGALAVEATEELKKTTIRKEAVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN