7000000545: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096

Overview

Basic Information

• IMG/M Taxon OID: 7000000545
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053103 | Ga0031063
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67414479
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F047127	Metagenome	150	N
F063778	Metagenome	129	Y
F071329	Metagenome	122	N
F085821	Metagenome	111	N
F092231	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2348023	Not Available	682
C2382417	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1699
SRS043755_WUGC_scaffold_16921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2800
SRS043755_WUGC_scaffold_19752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	586
SRS043755_WUGC_scaffold_26526	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1392
SRS043755_WUGC_scaffold_29748	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	660
SRS043755_WUGC_scaffold_45949	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8208

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2348023	C2348023__gene_110977	F085821	MDHIFEQLAPLAETKKQQTTVSKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDTSTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAEIQSHIALLK
C2382417	C2382417__gene_126788	F071329	ARGSASETTGIMRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
SRS043755_WUGC_scaffold_16921	SRS043755_WUGC_scaffold_16921__gene_16097	F063778	MPETISEGAKQQLLQQLQDALGLVENADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGHLKSCADQIEYAISSIKAIPLDPPPED
SRS043755_WUGC_scaffold_19752	SRS043755_WUGC_scaffold_19752__gene_19062	F092231	MIIFPPQEFITWANALAQFPWPIQLNDFLPYAEQLGWKPTSRPTWFNVLPDNDYALTNISSDRDGNVRNLFLPMASDETEDDEGAAELNDHFASCVVAGRKEWGEPFLLEAGDGPSVTWRFLGDMFAQVT
SRS043755_WUGC_scaffold_26526	SRS043755_WUGC_scaffold_26526__gene_26829	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDHMVGDHDIREILEKYNSK
SRS043755_WUGC_scaffold_29748	SRS043755_WUGC_scaffold_29748__gene_30754	F030786	VQMKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS043755_WUGC_scaffold_45949	SRS043755_WUGC_scaffold_45949__gene_56804	F027205	GSVKGPRGPTLVERTHVASRLIVSADDILKAVKESEEFERNALSEARKRDRAAGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK