7000000543: Human stool microbial communities from NIH, USA - visit 2, subject 158944319

Overview

Basic Information

• IMG/M Taxon OID: 7000000543
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053101 | Ga0030560
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 158944319
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76268879
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058555	Metagenome	135	N
F068811	Metagenome	124	N
F075481	Metagenome	119	N
F080673	Metagenome	115	N
F085718	Metagenome	111	N
F089591	Metagenome	109	N
F090484	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS024265_LANL_scaffold_13826	Not Available	8815
SRS024265_LANL_scaffold_28490	Not Available	1468
SRS024265_LANL_scaffold_29607	Not Available	3189
SRS024265_LANL_scaffold_6091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	500
SRS024265_LANL_scaffold_7624	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6437

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS024265_LANL_scaffold_13826	SRS024265_LANL_scaffold_13826__gene_18201	F090484	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTLVARRYRVNGIQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIKEAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISVQSLPNINITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
SRS024265_LANL_scaffold_14570	SRS024265_LANL_scaffold_14570__gene_19165	F089591	MAGLSLSPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAVRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK
SRS024265_LANL_scaffold_28490	SRS024265_LANL_scaffold_28490__gene_39921	F058555	MKLVIFAEKNKKMMGTKISLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMREGYRDRIEVNTDDFIDILSDGIAYFCYRHVVENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEYTKDIFVGKKTSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIDIGMQEISQSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG
SRS024265_LANL_scaffold_29607	SRS024265_LANL_scaffold_29607__gene_42212	F075481	MRLRISLKAVFCLGLSLFLSSCGSRRQVSEAFIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
SRS024265_LANL_scaffold_6091	SRS024265_LANL_scaffold_6091__gene_8038	F068811	FFERILKDGSRWIGTQHLIKPGRTVPRKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNGCRI
SRS024265_LANL_scaffold_7624	SRS024265_LANL_scaffold_7624__gene_10040	F085718	MGISFISRRQRKVVRNNISIGGDKMVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPMVVMIENNNVDDYIILRYNETGRRNIDGQSSLDLMLSVKEREPELWVVVISYIDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
SRS024265_LANL_scaffold_7624	SRS024265_LANL_scaffold_7624__gene_10046	F080673	MDEIMKLQDEALLYLRDNITKDEAYYILTTDKDMIEILISDKKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRGQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARML