7000000535: Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 7000000535
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053089 | Ga0030974
• Sample Name: Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64317967
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F043990	Metagenome	155	N
F061925	Metagenome	131	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1987950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	663
SRS019129_WUGC_scaffold_34	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	569
SRS019129_WUGC_scaffold_37149	All Organisms → cellular organisms → Bacteria → Proteobacteria	1093
SRS019129_WUGC_scaffold_42717	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	700

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1987950	C1987950__gene_110791	F043990	LGIIFTFGVIILGIVVYADHKIERSWIEGEFGVNMINMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNTTNGYYKYVVDENDDWNFGILIVDTARKEICIYNQIF
SRS019129_WUGC_scaffold_34	SRS019129_WUGC_scaffold_34__gene_9	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHQSSNPRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWST
SRS019129_WUGC_scaffold_37149	SRS019129_WUGC_scaffold_37149__gene_31762	F061925	GKSSQTNIRNNPMSWEYSINLDSEESASSVVTDLKICELFCSSTTDYIDWKNPKSIDSIPYDARFYTDNKKTIYIAINSFSKNIFSALNLILAKHDYHLTDCDTDEEVTLEHIFRSVI
SRS019129_WUGC_scaffold_42717	SRS019129_WUGC_scaffold_42717__gene_40450	F030786	LHQKRIRNKVQMKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGSAMVAKKISLTDIIDGDDSETGVLKVKYFDDEGVDKIFENNNNRILNAINSQHISYNSQSAEYSKPQLFLLYQSLKVDC