7000000527: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 7000000527
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053081 | Ga0031283
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 87125891
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F051212	Metagenome	144	N
F054110	Metagenome	140	N
F080164	Metagenome	115	N
F081455	Metagenome	114	N
F092229	Metagenome	107	N
F099452	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C5824942	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	533
C5864709	Not Available	774
C5867269	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	799
C5876403	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	902
C5877527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	917
C5879679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	948
C5901969	All Organisms → Viruses → Predicted Viral	1493
C5908557	Not Available	1847
C5912839	All Organisms → Viruses → Predicted Viral	2227

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5824942	C5824942__gene_70295	F043235	EFGTQLTDALLDRPDRSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAK
C5864709	C5864709__gene_94945	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSRHIFTLYSDIIDLDDVSLLTDLRKTDWYEDWFTDDCKNADLIDLSRFNFNSLARFEKEEYLRNVERYDFEAVTPVDSYGLFDTLTKDNDVELFKLAAENILINHGFFNKTDYNFCDIPNEYMGDKEVSVYMCLLNIENMIFVDKKTLDTTILYNIVKDHICGFIYFTLFDRLNKDTRTRAR
C5867269	C5867269__gene_96688	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSQLNNHLNLEK
C5876403	C5876403__gene_103053	F046432	MQMTENELSEVISKFQMPEGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREGGFENLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS
C5877527	C5877527__gene_103891	F046431	VFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSNNFETIGLTDFSPEAIEEEVKVLNVYPHSKNESQSAYPGSHAFQTLPNVNVTYLDGSTETIEKPALLKVWMEGRNSK
C5879679	C5879679__gene_105498	F054110	YRMCNTNLNRYCVVLDVNYQPMIKKLLKALQMNGRRYVVDTRQSWSKFDKPCKVYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD
C5901969	C5901969__gene_124597	F092229	DVLECMMDINPIVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDSLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVRDIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLEEYREEGKFIYGTKEYKILKELRSSPLMVVLTQLTRKNDSGYILNSNLELVKG
C5908557	C5908557__gene_131580	F080164	MVGLTLCAAPQVTLRERASAFPLITEKAPSEIYAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEHYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
C5912839	C5912839__gene_136802	F081455	VLFKAKEKHIMETMKNLLEMENVECISNLISKCSDYINRKERNTNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECNPNKRLRYELIRHQGREKDLVIRLSTVIDGKTKYYADIYPDLNKIDLDHHLISSAKK