7000000524: Human throat microbial communities from NIH, USA - visit 2, subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 7000000524
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053078 | Ga0031224
• Sample Name: Human throat microbial communities from NIH, USA - visit 2, subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83711704
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043990	Metagenome	155	N
F046431	Metagenome	151	Y
F047508	Metagenome	149	N
F061927	Metagenome	131	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1609981	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270	630
C1640279	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	913
C1648545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1063
C1649744	All Organisms → cellular organisms → Bacteria	1090
C1655886	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1272

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1609981	C1609981__gene_97770	F047508	FDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
C1640279	C1640279__gene_115710	F043990	MIKKLGIIFIFGVIILGIVVYADHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGKKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDEN
C1648545	C1648545__gene_121085	F046431	LLIIMLTYIQTLVFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSNNFETIGLTDFSPEAIEEEVKVLNVYPHSKNESQSAYPGSHAFQTLPNVNVTYLDGSTETIEKPALLKVWMEGRNSK
C1649744	C1649744__gene_121899	F061927	ILSVMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK
C1655886	C1655886__gene_126203	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSIENPEIAIHKPVISVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY