7000000518: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159611913

Overview

Basic Information

• IMG/M Taxon OID: 7000000518
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053071 | Ga0031091
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159611913
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103350449
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F033081	Metagenome	178	Y
F051214	Metagenome	144	N
F063778	Metagenome	129	Y
F074985	Metagenome	119	N
F077403	Metagenome	117	N
F085821	Metagenome	111	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C3644093	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	712
C3683863	Not Available	1305
C3705462	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	10036
SRS024649_LANL_scaffold_1868	All Organisms → Viruses → Predicted Viral	1930
SRS024649_LANL_scaffold_21987	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5100
SRS024649_LANL_scaffold_45919	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	7139
SRS024649_LANL_scaffold_49028	All Organisms → Viruses	3203
SRS024649_LANL_scaffold_49378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2697
SRS024649_LANL_scaffold_50970	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3644093	C3644093__gene_157752	F033081	MAWLFNRVMPTDSRPAFVWPRLVVAIEDTRHFDRRELSFIAVVLIVMTIATIKVLLMIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGMTGAFLIGDFTNYTPSQKLLHKTKATRYEAYNTLLLFALMEEQAFRSGSEKWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIVATAAAATLHT
C3683863	C3683863__gene_177541	F077403	VGHAEEGISVRFEVHWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDASRPEKYNLTYYVPRWATYPLKGAGHSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGGWQFLLPDWEASGRLRDERIPLNVYQLRGKDSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
C3705462	C3705462__gene_194457	F077403	MDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYEERVRRHITHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLL
SRS024649_LANL_scaffold_1868	SRS024649_LANL_scaffold_1868__gene_1799	F018385	MMAEYNNQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDYLGCCRIACPRDGKILCFNWVHWTAYMFTHDGMNELVFMPGSSRKTISRLYYEEVK
SRS024649_LANL_scaffold_21987	SRS024649_LANL_scaffold_21987__gene_22199	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTCASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQKAWKAIHMGSTKRLNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS024649_LANL_scaffold_21987	SRS024649_LANL_scaffold_21987__gene_22205	F051214	ELKDCFEAFRRGVEYREKNDIDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRAFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
SRS024649_LANL_scaffold_45919	SRS024649_LANL_scaffold_45919__gene_51295	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEERSLTHYVPRWATFTLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGVSNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLL
SRS024649_LANL_scaffold_49028	SRS024649_LANL_scaffold_49028__gene_56292	F105377	MRDFDKLPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNDWKAIETLLRQNDVPDITVASFGLKRFEEIFDVFATLSERGWHLWQTAANVYVGGERKTVQAIRAHYRGD
SRS024649_LANL_scaffold_49378	SRS024649_LANL_scaffold_49378__gene_56916	F063778	MPETISEGAQQQLLHQLQDALGLVKDADTSTHDVAAITQSAADGHQLTEVMLQQMMAARGYLKSCADQIECAISNIKAIPLDPPPED
SRS024649_LANL_scaffold_50970	SRS024649_LANL_scaffold_50970__gene_59796	F085821	EKGFKFTRQPDVQKFKLLTADFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANVNKTLSIIRSGETIASRKEDVAKHSKTLNNEYNQNVNLLYEYCRALLYTAETT