7000000516: Human stool microbial communities from NIH, USA - visit 2, subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 7000000516
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053069 | Ga0030525
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 193953910
• Sequencing Scaffolds: 3
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F064817	Metagenome	128	N
F068811	Metagenome	124	N
F078004	Metagenome	117	N
F094005	Metagenome / Metatranscriptome	106	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2470966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	547
SRS019161_WUGC_scaffold_55494	All Organisms → cellular organisms → Bacteria	23344
SRS019161_WUGC_scaffold_65904	Not Available	11199

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2470966	C2470966__gene_216305	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFRHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNGCRI
C2542261	C2542261__gene_244684	F078004	LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNAF
SRS019161_WUGC_scaffold_55494	SRS019161_WUGC_scaffold_55494__gene_99019	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYAINDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
SRS019161_WUGC_scaffold_55494	SRS019161_WUGC_scaffold_55494__gene_99020	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGKFTRLDGKGNAIILPCTAENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
SRS019161_WUGC_scaffold_65904	SRS019161_WUGC_scaffold_65904__gene_129017	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMVSKQDGFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV
SRS019161_WUGC_scaffold_65904	SRS019161_WUGC_scaffold_65904__gene_129018	F064817	MNIKNLFNRFRKWELELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPVHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI