7000000515: Human stool microbial communities from NIH, USA - visit 2, subject 159227541

Overview

Basic Information

• IMG/M Taxon OID: 7000000515
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053068 | Ga0030569
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159227541
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173847267
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F047125	Metagenome / Metatranscriptome	150	N
F051210	Metagenome / Metatranscriptome	144	Y
F072445	Metagenome / Metatranscriptome	121	Y
F078004	Metagenome	117	N
F088921	Metagenome	109	N
F102167	Metagenome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2566794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1068
C2638302	Not Available	14208
SRS049995_LANL_scaffold_13453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	892
SRS049995_LANL_scaffold_15962	Not Available	14348
SRS049995_LANL_scaffold_32991	Not Available	13833
SRS049995_LANL_scaffold_3538	Not Available	30191
SRS049995_LANL_scaffold_35869	All Organisms → cellular organisms → Bacteria	1526

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2566794	C2566794__gene_216711	F088921	LGGCKKIAVKTSALGATIRLYKIGARKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRYKMWSK
C2638302	C2638302__gene_249554	F051210	MQTPEMLDALVNSSVSVDDANSRSREYGKMFSRNEELRDMFGLGNRQNLLQKTFSGYAETPLLSTQYFNASVASFCSSFAGFMSVERDFEQPTGLFYWFDVLGVTDMREVIPNLGPDSYQDIQSMGGFTLEVTPTATAAYSSLIGRKIIPSSLRVKIVTETEKFELIDNGQGQFMSIAGKLKSSSINYLNGRVEFELATALAGDVSKEKITIVGKEDVTGTPCNTVGASNAHANDKRFIAKMQQIGLTTVPDMLVAEYNIASLGALKKAINADMATFLFTKLRELYTKMINYKLVATLEEGYTGNTMADLNLSQDNLTGKFYDYRSRIDLFDSYLINVESALATKAVKGVTTTAYLAGNAAANQFQKGGMIGKWEKNTKMTYINDLLGWYNGIPVLRSTDVNEAAGEGTFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYANPTQMAAGIYYQEGTRYMAPELVQKVTFKLGF
SRS049995_LANL_scaffold_13453	SRS049995_LANL_scaffold_13453__gene_35851	F047125	NDRTDRMDVALLLMVLGVMLSGFRAADALDHIRQEILRQEGKRRGWWS
SRS049995_LANL_scaffold_15962	SRS049995_LANL_scaffold_15962__gene_41708	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNSYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGENNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVNDGIPVDRLSRSKKLIYIGLSNMGQRMTVIPEAIISKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKKLNITPAPSDMWNYFDINTLPFFEVDKINPNITDFYFLSNWMNGERRTGWNDDNMSGRGLEHLTCFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
SRS049995_LANL_scaffold_32991	SRS049995_LANL_scaffold_32991__gene_85101	F072445	MASVASLVRGSDGYMNFIDYQSTYKDDNKEFLRGDMWEFTLINPPKIVYYPGDKIFKARLNQVNLGIDTSVSGFEKRMRGNYVIFQRTGQMTSGQITLQFTDKEDQAITYFVDDWRQKIADRDTKYSFRKDDLVADAQLVITNSSRIKVRTLNFYNCIIRDAGIDENGTAEDGTDRAEVPLTLDFEHYERRCLRISHELLGRIIISISRMANKVIFNDYVCELGN
SRS049995_LANL_scaffold_3538	SRS049995_LANL_scaffold_3538__gene_10242	F105375	MKNNETFQTTQHLDKLVINLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
SRS049995_LANL_scaffold_35869	SRS049995_LANL_scaffold_35869__gene_93767	F102167	IKKYLPLGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
SRS049995_LANL_scaffold_37927	SRS049995_LANL_scaffold_37927__gene_100460	F078004	TGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKALTAGAVTVTGVLAAHHDVTLAAQTILIIGTIFHNTF