7000000514: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683

Overview

Basic Information

• IMG/M Taxon OID: 7000000514
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053067 | Ga0031090
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 116507663
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F071327	Metagenome	122	N
F090516	Metagenome	108	N
F095632	Metagenome	105	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2824698	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1240
C2844170	All Organisms → Viruses → Predicted Viral	2204
C2854748	All Organisms → cellular organisms → Bacteria	25344
SRS024561_LANL_scaffold_28431	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	6094
SRS024561_LANL_scaffold_31456	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2195
SRS024561_LANL_scaffold_40733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	42626
SRS024561_LANL_scaffold_4253	All Organisms → cellular organisms → Bacteria	8880

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2824698	C2824698__gene_192350	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGTHCFNGDFNVTYYDLENDAETEDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLTTDIYFHLEDKLDGKIHIKPIPEEEKVVPTQKHLAKFLAFCGVEQDVIDENTERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLA
C2844170	C2844170__gene_205547	F101360	VSKEDALRRAVIAAHVAKVASQEKKKALKKLEEVMVPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKAFVAWLEWNKPDAVHKVPAPWFVAATSLDGFIKQTGEIPDGVELVTPNPRISARVSPAQEEAIQELIATGDISLIEIEAPE
C2854748	C2854748__gene_217134	F103434	MVTFRPRRGRYLENGPHAVEVTVAIVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRIIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK
SRS024561_LANL_scaffold_28431	SRS024561_LANL_scaffold_28431__gene_33833	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDSDIREILEKYNRK
SRS024561_LANL_scaffold_31456	SRS024561_LANL_scaffold_31456__gene_38073	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSETSGFSSYFRLFEYGIIILTCAGMITYVYMFLKNNQILTLKMLIIALVAALLFEYAYP
SRS024561_LANL_scaffold_40733	SRS024561_LANL_scaffold_40733__gene_54060	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQNN
SRS024561_LANL_scaffold_40733	SRS024561_LANL_scaffold_40733__gene_54078	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSSREWDQKDDVNHLTTIWMRPSLYDIERKTS
SRS024561_LANL_scaffold_4253	SRS024561_LANL_scaffold_4253__gene_4342	F051211	MKAKKAIRIFKKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPERILNLRRQRHERHVILRIFIDGSTYNIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSKLFRGNPKEFYIAIDKWLADTRAHHSS