7000000512: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160178356

Overview

Basic Information

• IMG/M Taxon OID: 7000000512
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053065 | Ga0031049
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160178356
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111318010
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F047127	Metagenome	150	N
F054111	Metagenome	140	N
F061926	Metagenome	131	N
F064818	Metagenome	128	N
F071327	Metagenome	122	N
F074985	Metagenome	119	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F092232	Metagenome	107	N
F095632	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4040650	Not Available	947
C4079369	Not Available	20081
SRS018394_Baylor_scaffold_15855	All Organisms → cellular organisms → Bacteria	1111
SRS018394_Baylor_scaffold_16932	All Organisms → cellular organisms → Bacteria	9596
SRS018394_Baylor_scaffold_22759	Not Available	751
SRS018394_Baylor_scaffold_3488	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1672
SRS018394_Baylor_scaffold_39240	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	800
SRS018394_Baylor_scaffold_41452	All Organisms → cellular organisms → Bacteria	1950
SRS018394_Baylor_scaffold_47238	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	15926
SRS018394_Baylor_scaffold_48507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi	3577
SRS018394_Baylor_scaffold_52726	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	920
SRS018394_Baylor_scaffold_58036	All Organisms → Viruses → Predicted Viral	1401
SRS018394_Baylor_scaffold_9330	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1000

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4040650	C4040650__gene_183446	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVTYLQGHAMHSVATEAVVTEGELRPYVHRLAFVPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWI
C4079369	C4079369__gene_211852	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYENPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
SRS018394_Baylor_scaffold_15855	SRS018394_Baylor_scaffold_15855__gene_16506	F054111	MNKSLESITHEEFLKLMERLKNLQEFTFLEYTMAPEADIFYFNFMEKTMKIKWDLDYGLFLETESLSTADRDLFLNILDKEILFLI
SRS018394_Baylor_scaffold_16932	SRS018394_Baylor_scaffold_16932__gene_17625	F018385	MDTSGTEITMDEYENQWGPYKEQSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK
SRS018394_Baylor_scaffold_22759	SRS018394_Baylor_scaffold_22759__gene_23522	F022002	SLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFERIESELENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS018394_Baylor_scaffold_3488	SRS018394_Baylor_scaffold_3488__gene_3580	F047127	MKKTFAFILLSIISLTKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK
SRS018394_Baylor_scaffold_39240	SRS018394_Baylor_scaffold_39240__gene_40887	F061926	MMIKIAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS018394_Baylor_scaffold_41452	SRS018394_Baylor_scaffold_41452__gene_43134	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYSRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLPLNDERVQGLFEYDNMVTKNECKLFSPFGLIFGKKDYQQAAKQRILQRK
SRS018394_Baylor_scaffold_47238	SRS018394_Baylor_scaffold_47238__gene_49421	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFILDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
SRS018394_Baylor_scaffold_48507	SRS018394_Baylor_scaffold_48507__gene_50861	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN
SRS018394_Baylor_scaffold_52726	SRS018394_Baylor_scaffold_52726__gene_55531	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAY
SRS018394_Baylor_scaffold_58036	SRS018394_Baylor_scaffold_58036__gene_61325	F074985	MMELTDSGWYKTPRIVKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQVLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMYID
SRS018394_Baylor_scaffold_58036	SRS018394_Baylor_scaffold_58036__gene_61326	F036281	MQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAELETGHWYTFRMSDAQKSKFTRYTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS018394_Baylor_scaffold_9330	SRS018394_Baylor_scaffold_9330__gene_9589	F030786	VQMKRTKIHKVVFQMLVVMIVTSSLQLLLKNGYTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQRISFDSQSAEYSKPQLFLLYRSLRVDC