7000000508: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765013792

Overview

Basic Information

• IMG/M Taxon OID: 7000000508
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053060 | Ga0031277
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765013792
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 140881499
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F036281	Metagenome	170	N
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F051214	Metagenome	144	N
F066860	Metagenome	126	N
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F074985	Metagenome	119	N
F076191	Metagenome	118	N
F080164	Metagenome	115	N
F080165	Metagenome	115	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F095633	Metagenome	105	N
F099454	Metagenome	103	N
F103432	Metagenome	101	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3609730	Not Available	634
C3625295	Not Available	704
C3630491	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	732
C3645892	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	835
C3658445	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	953
C3658817	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	957
C3668094	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1085
C3685531	All Organisms → Viruses → Predicted Viral	1481
C3690875	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1681
C3709167	Not Available	3983
SRS018739_WUGC_scaffold_13867	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter	1014
SRS018739_WUGC_scaffold_23270	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1081
SRS018739_WUGC_scaffold_32985	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1523
SRS018739_WUGC_scaffold_43287	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	30417
SRS018739_WUGC_scaffold_45178	Not Available	2352
SRS018739_WUGC_scaffold_48794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2389
SRS018739_WUGC_scaffold_54250	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	652
SRS018739_WUGC_scaffold_59731	Not Available	797
SRS018739_WUGC_scaffold_59741	Not Available	2500
SRS018739_WUGC_scaffold_59760	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	817

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3609730	C3609730__gene_177996	F068942	KYPLEATKPILQIQSSVLIDNPHTKSVMIRKILSLPTLALCFTLCTALFAGCGENNLGFVTEVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPEMDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKHFKFSVSVTPPGTYFFNVRQPALPAKAQ
C3625295	C3625295__gene_185541	F085820	LFAMLFLATTFFSCETNEPAPRATWGEIVNPIKAFMYPRDLEVSEDQYDSRRWHILVVPDSTKSSFAPTSKSTPAEVARYKELSRLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTYKQIFDCHFKCGDRSIFAKPLGEVVEADYLWLPGIDEFGLVTPPNPDHLKQRIVLRLADGTEIEKELSEKGKK
C3630491	C3630491__gene_188147	F051214	MPGKIVAHDTHLRIDTEFIELNDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
C3645892	C3645892__gene_196006	F099454	MKASELLWAVVIALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK
C3658445	C3658445__gene_202771	F080165	VKERVFYGEDMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIYEDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C3658817	C3658817__gene_202980	F043991	KNPSVVDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
C3668094	C3668094__gene_208156	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTITIISGFVVVLSLFVAVTFGIAEDKE
C3685531	C3685531__gene_219150	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYAEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFKKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLR
C3685531	C3685531__gene_219151	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDRWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
C3690875	C3690875__gene_223003	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVNTLIQISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C3709167	C3709167__gene_239194	F071328	MSQKHWTFTHIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIDPNKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKKYVSAILRQYGIHYIEYGDNEHRVFFLDRGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS018739_WUGC_scaffold_13867	SRS018739_WUGC_scaffold_13867__gene_14555	F105376	MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK
SRS018739_WUGC_scaffold_23270	SRS018739_WUGC_scaffold_23270__gene_24876	F045567	MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVKDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS018739_WUGC_scaffold_32985	SRS018739_WUGC_scaffold_32985__gene_36147	F089055	KVEKMNSTPECVTKTPEIEAREKLAAIFSDAERRGDNSKVSPELGKTAIDIENTSKMDSADNGAVDFCNQALGGYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK
SRS018739_WUGC_scaffold_43287	SRS018739_WUGC_scaffold_43287__gene_49283	F076191	MSMKIIAENPAEEALLWRIKALSDELVNQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAEHHINENDHHYENPTTCIRSAHDNRELKDVIHLLILAGDNEIPSNHYGVLRDA
SRS018739_WUGC_scaffold_45178	SRS018739_WUGC_scaffold_45178__gene_51836	F103432	MKLIHSLFSLPLLLVLGGLLCLTACQDEAEPARAAWLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRIVPMLPRQLHVTMEGKTLFRRHTLPSVSAYSLRVVAVGDTIYRQKESDAEFNADLDALFHESIGIAPRLFGVKELSVVGIDRKGKPRDLGNYSCPLLQGKRRNVNYRTREGIFHEHYEAASVDTFSVKSNWLLKTKAEPSLYVPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR
SRS018739_WUGC_scaffold_45178	SRS018739_WUGC_scaffold_45178__gene_51837	F080164	MVGLALCAAPQVTLRERASAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEHVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS
SRS018739_WUGC_scaffold_48794	SRS018739_WUGC_scaffold_48794__gene_56743	F046431	MKKITKINITIILILSIIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPDSNQFETIGLTDFSNNATDEEVKVLNIYPQENNANPRLYPDQTPEQVRQHFTSLPKVQVTYLDGQTETIPKSALLKVWMEGRNSKRR
SRS018739_WUGC_scaffold_54250	SRS018739_WUGC_scaffold_54250__gene_65813	F095633	MKNYENSTEAWRGEGLTEGELRTMGTLAMRATEELRKTTVRKEAVLLGSVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDGGEMSVEENSVPEEVFIDLSRTRCVVDADRSHKSYEFTCPVLKKFPDGELYPIREAYVISAIDVNGSQEVDFKII
SRS018739_WUGC_scaffold_59731	SRS018739_WUGC_scaffold_59731__gene_77117	F085820	RSTFYLFAVLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEIEKELSEKGKK
SRS018739_WUGC_scaffold_59741	SRS018739_WUGC_scaffold_59741__gene_77146	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVSVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLRRQGINVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
SRS018739_WUGC_scaffold_59741	SRS018739_WUGC_scaffold_59741__gene_77147	F032313	MYRFLILIFALTLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK
SRS018739_WUGC_scaffold_59760	SRS018739_WUGC_scaffold_59760__gene_77195	F033081	MAWLFRRAMPQDTRPTFVWSRLVAEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVSMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNILLLLALLEEQAFRSGSERWNWRERVRASVCFGLLHVMNIWYSFAAGIALSVTGFGFLLVYLWYYRKYCSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL