7000000507: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160218816

Overview

Basic Information

• IMG/M Taxon OID: 7000000507
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053059 | Ga0027964
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160218816
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124725078
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F046431	Metagenome	151	Y
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F077403	Metagenome	117	N
F095630	Metagenome	105	N
F101358	Metagenome	102	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3811149	Not Available	675
C3850385	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	993
C3871182	All Organisms → Viruses → Predicted Viral	1487
C3886895	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3305
C3889401	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4641
SRS018443_Baylor_scaffold_17039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1102
SRS018443_Baylor_scaffold_21453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	9103
SRS018443_Baylor_scaffold_22459	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	8252
SRS018443_Baylor_scaffold_35579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	6222
SRS018443_Baylor_scaffold_5113	All Organisms → cellular organisms → Bacteria	18178
SRS018443_Baylor_scaffold_65639	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5128

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3811149	C3811149__gene_184348	F077403	NPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYEERVRRHITHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLL
C3850385	C3850385__gene_203848	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYEPDTGWTVWYFRLEGGEVMKFRALEWEQKDDVNHLTTIWMRPSLHDIERKEN
C3871182	C3871182__gene_215622	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYSAKEYYDYWAAREGRPAPFFYEARQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
C3871182	C3871182__gene_215623	F027205	VASRLIVTADDIMRAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK
C3886895	C3886895__gene_226644	F018385	MMAEYENQWGPYKEHSIENDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTYDGLNELVFMPGSSRKTISRLYYEEVK
C3886895	C3886895__gene_226645	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASTIVAREVEKQFDETVKAVKEARDHIEIED
C3886895	C3886895__gene_226646	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITTKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
C3889401	C3889401__gene_228952	F022002	DGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS018443_Baylor_scaffold_17039	SRS018443_Baylor_scaffold_17039__gene_19352	F046431	IILILSIIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR
SRS018443_Baylor_scaffold_21453	SRS018443_Baylor_scaffold_21453__gene_24266	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSAYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRIYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQLS
SRS018443_Baylor_scaffold_22459	SRS018443_Baylor_scaffold_22459__gene_25426	F095630	MYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDKGLFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQVFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRRSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIIMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTVYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS018443_Baylor_scaffold_35579	SRS018443_Baylor_scaffold_35579__gene_40455	F103434	MVTFRPRRGRYLENGPHAVEVTVAIVSEGRTGRRYAPGETFYVDKVLVQPSAGNALKATENRAIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK
SRS018443_Baylor_scaffold_5113	SRS018443_Baylor_scaffold_5113__gene_5785	F101358	MTEKHSASPTAKEETLAPLPPRQPEHLLTQPITVDGAPEKRATHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHRLEKCVSLAVLQEQNLDFTNAYLQRAYGVMIKDGRLQPVADTTHATTSSQEQQTEILPAQGGDTYEHLGGDSARQLVGSVAAKASDGEVDNSLLAQRALERIR
SRS018443_Baylor_scaffold_65639	SRS018443_Baylor_scaffold_65639__gene_87668	F101360	VNKENALRRAAIAAHVAKVASQEKKKALNELMEVMAPGDRSYATVNGEQVGAISVTTATPAYQVTDEQALVRWLEWNKPDAIHRVPAPWFTAKAALDGFIKQTGEIPDGVELVTPTPRISARVSPAQEEVIRELIAIGDISLIEIEGAE