NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000505

7000000505: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764508039



Overview

Basic Information
IMG/M Taxon OID7000000505 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053057 | Ga0027946
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 764508039
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18874266
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081510Metagenome114N
F095631Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SRS016039_WUGC_scaffold_15917All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes56211Open in IMG/M
SRS016039_WUGC_scaffold_2746All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales241338Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SRS016039_WUGC_scaffold_15917SRS016039_WUGC_scaffold_15917__gene_20876F081510MKLPDMKAVKAAAKTTYTTSKILTKKYAPFILLGVGLVGYGYSVYEGVKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVESVVPNEGDFYGRWFKYSSNYAADDPEYNEAWVREVDNMLTARMAKAGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYIEWDTHEVWNDDKQELEPQLYVRWKTPRNLYATTNFKDLAPKKTRKELN
SRS016039_WUGC_scaffold_2746SRS016039_WUGC_scaffold_2746__gene_2534F095631MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNTSYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFINYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEEYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA

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