7000000503: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764811490

Overview

Basic Information

• IMG/M Taxon OID: 7000000503
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053055 | Ga0031340
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764811490
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 125156839
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F043235	Metagenome	156	N
F046432	Metagenome	151	Y
F051213	Metagenome	144	N
F054110	Metagenome	140	N
F071328	Metagenome	122	N
F076191	Metagenome	118	N
F085820	Metagenome	111	N
F094007	Metagenome	106	N
F095630	Metagenome	105	N
F103432	Metagenome	101	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3225745	Not Available	530
C3282455	Not Available	854
C3293073	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	988
C3298765	Not Available	1088
SRS053603_LANL_scaffold_2684	Not Available	2083
SRS053603_LANL_scaffold_26870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	543
SRS053603_LANL_scaffold_33948	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	20305
SRS053603_LANL_scaffold_63506	All Organisms → cellular organisms → Bacteria	3836
SRS053603_LANL_scaffold_74298	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2707
SRS053603_LANL_scaffold_77813	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2372
SRS053603_LANL_scaffold_81459	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1134
SRS053603_LANL_scaffold_86198	Not Available	30693

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3225745	C3225745__gene_187344	F054110	VFDVNYQPTIKKLLKALQMNGRRYVVDVRQTWSKFDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE
C3282455	C3282455__gene_202879	F103432	QIMKLIHSLFSLSLLLVLGGLFCLTACQDDAAPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGMAPRLFGVKELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFSVKDDWLLNTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR
C3293073	C3293073__gene_205747	F105380	MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVNTYEEFIE
C3298765	C3298765__gene_207314	F071328	MKWEFISEGECIVEFVKLYKHLVLERTIDPKIHQTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRLCGIHYREYGDDEHRVFFLDTDVNIYFCKHSQLPIYILQRIEFSNKEYRSFILKVLPVKKGEW
SRS053603_LANL_scaffold_2684	SRS053603_LANL_scaffold_2684__gene_3212	F032313	MNFMSNCNWRAQSVSIESFKIVLMYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK
SRS053603_LANL_scaffold_2684	SRS053603_LANL_scaffold_2684__gene_3213	F032313	MYRLLILLFAITLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTRVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVMLEAK
SRS053603_LANL_scaffold_26870	SRS053603_LANL_scaffold_26870__gene_40107	F094007	KAGEFFVGVDYLWILWYNSYRMELKTAEVLDLARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGRIRRRAGFAECHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCI
SRS053603_LANL_scaffold_33948	SRS053603_LANL_scaffold_33948__gene_51280	F085820	MLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSDKGKK
SRS053603_LANL_scaffold_63506	SRS053603_LANL_scaffold_63506__gene_99145	F046432	MQMSESELNKVISKYQLPEDQYSIEQEGSFGRGEFFWVIKNESTNKKYLLMNTYSHHGVEAELECYREGGFDNLEAIPRRIETLEKASDADDEIFKYLFGFYSIFEIKS
SRS053603_LANL_scaffold_74298	SRS053603_LANL_scaffold_74298__gene_117669	F051213	MKVSKLLWAVVMALTFVLISCDRVTDEPTIEGEMKKLFDSQAQRKSFRVLTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
SRS053603_LANL_scaffold_77813	SRS053603_LANL_scaffold_77813__gene_124111	F095630	MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFILSDIILTAKTYGDTCFMDVEFYSSEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDITYRKADSKSSVNTLFRMPCIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSRSPFCDNLQAALVRCSHNYEQVLLDRGALNSILGGCVIGGKGWLKMADNTLIGQILKAIEIDVYDI
SRS053603_LANL_scaffold_81459	SRS053603_LANL_scaffold_81459__gene_131647	F043235	GDRPDTDLKRISVVDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS053603_LANL_scaffold_86198	SRS053603_LANL_scaffold_86198__gene_144453	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTIYVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDV