7000000501: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809

Overview

Basic Information

• IMG/M Taxon OID: 7000000501
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053053 | Ga0031100
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33564287
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F081510	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1066329	All Organisms → cellular organisms → Bacteria	543
C1068929	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	568
C1076598	All Organisms → cellular organisms → Bacteria	667
C1080127	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	734
C1090704	All Organisms → Viruses → Predicted Viral	1164
SRS047265_WUGC_scaffold_14000	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	23161
SRS047265_WUGC_scaffold_19693	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1480
SRS047265_WUGC_scaffold_20438	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	838
SRS047265_WUGC_scaffold_22343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1204
SRS047265_WUGC_scaffold_22968	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	927
SRS047265_WUGC_scaffold_24446	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4738

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1066329	C1066329__gene_54615	F054111	MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILNKEILFLI
C1068929	C1068929__gene_55619	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGQYKKKLKALLSD
C1076598	C1076598__gene_58681	F061927	MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDNRIEKAISSCIGE
C1080127	C1080127__gene_60090	F049707	VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFVERWAEYEPDTGWTVWYFRLEDGRVMTFRALEWEQRDDVNHLTTIYFAPKQKENS
C1090704	C1090704__gene_64557	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPGLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL
SRS047265_WUGC_scaffold_14000	SRS047265_WUGC_scaffold_14000__gene_14648	F081510	MKLPKLPNLQTIKSTAKSAMVTTKILGKKYAPVVLLGVGLVGYGYSVYAGIKSGKKLEATKAKYEAKDAAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPMETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYASDNPDYNESYIKEADKYLTDRMMKKGVLTFGEVLEELGFDVPRAALPFGWTDTDSFYIEWDAHEVFNEEKQEYDLQFYVRWKTPRNLYATTSIKDFVPKKTRKELN
SRS047265_WUGC_scaffold_19693	SRS047265_WUGC_scaffold_19693__gene_22993	F081456	YPDLGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE
SRS047265_WUGC_scaffold_20438	SRS047265_WUGC_scaffold_20438__gene_24190	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEVVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYS
SRS047265_WUGC_scaffold_22343	SRS047265_WUGC_scaffold_22343__gene_27422	F063778	MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAIDNIEAIPLDPPPED
SRS047265_WUGC_scaffold_22968	SRS047265_WUGC_scaffold_22968__gene_28570	F071329	MLPVAKIIIAGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS047265_WUGC_scaffold_24446	SRS047265_WUGC_scaffold_24446__gene_32080	F051214	MGYRSLKGAHMPGKIVAHHTHLRIDTEFIELKDCFEAFRRGVEYKEKNDIDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENITLKPIYIYNNREYQIACEFLRQILHDKIDLKKEWLV