7000000495: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160704339

Overview

Basic Information

• IMG/M Taxon OID: 7000000495
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053047 | Ga0031069
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160704339
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75366519
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F063778	Metagenome	129	Y
F071329	Metagenome	122	N
F092232	Metagenome	107	N
F095631	Metagenome	105	N
F095632	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2912951	All Organisms → cellular organisms → Bacteria	524
C2933282	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270	621
C2944921	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	705
C2954473	All Organisms → cellular organisms → Bacteria	805
C2962284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	922
C2976086	Not Available	1353
C2984360	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2395
C2987821	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7379
SRS020340_Baylor_scaffold_25406	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	27860
SRS020340_Baylor_scaffold_25544	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	553
SRS020340_Baylor_scaffold_34745	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2977
SRS020340_Baylor_scaffold_38672	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	595
SRS020340_Baylor_scaffold_5345	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	73911
SRS020340_Baylor_scaffold_7820	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	643

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2912951	C2912951__gene_107869	F040149	ADEGAKEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLAPVWSHDSEDAIDYFIYDASVPKGHALTAVRE
C2933282	C2933282__gene_116462	F047508	VEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
C2944921	C2944921__gene_121647	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHVEIED
C2954473	C2954473__gene_125949	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCSLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTCAGARTEKNYLHVSRRESYHGKEKPRLTEREGAW
C2962284	C2962284__gene_129591	F063778	MPETISEEAKRQLLRQLQDALGLVADADTSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDP
C2976086	C2976086__gene_136619	F054109	RPKTKRGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVARDEKSEA
C2984360	C2984360__gene_141704	F095632	MIMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN
C2987821	C2987821__gene_144938	F049707	VVSEYRSPHNDGHDPYILIWEYGNDAKRAEFSERWATFGEDGWTIWHFLLVDGGVMTFSSREWEQKDDVNHLTTIHFQPKIQNNERGNS
SRS020340_Baylor_scaffold_25406	SRS020340_Baylor_scaffold_25406__gene_28689	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAASDKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA
SRS020340_Baylor_scaffold_25544	SRS020340_Baylor_scaffold_25544__gene_28892	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFCKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
SRS020340_Baylor_scaffold_34745	SRS020340_Baylor_scaffold_34745__gene_40227	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSAYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHECILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQLS
SRS020340_Baylor_scaffold_38672	SRS020340_Baylor_scaffold_38672__gene_45756	F036281	KETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQESKFTRHTITNEKGHQSYDWVLENVEWAADTIRYF
SRS020340_Baylor_scaffold_5345	SRS020340_Baylor_scaffold_5345__gene_5587	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGSQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFIAAFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNIIGKIAPTKAFETQLRPAFINMEDSGSIIFED
SRS020340_Baylor_scaffold_7820	SRS020340_Baylor_scaffold_7820__gene_8299	F018385	MMAEHVNRWDPYAEVPIETHRDPVKDDPFIYGVNVPHFTVTVYSLDGRVNKYWNARILEDLLGYCRIACPRDGKILKFKWSDWSVYMFSHEGLNELVFMPDSGRKIITQLFDKEVN