7000000491: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 338793263

Overview

Basic Information

• IMG/M Taxon OID: 7000000491
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053043 | Ga0031105
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 338793263
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52101775
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F040149	Metagenome	162	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F055792	Metagenome	138	N
F067847	Metagenome	125	N
F077403	Metagenome	117	N
F084362	Metagenome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1777941	Not Available	500
C1789601	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	559
C1805992	Not Available	686
C1821414	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	932
C1822434	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	957
C1828632	All Organisms → Viruses → Predicted Viral	1167
C1833075	All Organisms → cellular organisms → Bacteria	1448
C1836497	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1847
SRS052604_LANL_scaffold_10869	Not Available	1926
SRS052604_LANL_scaffold_19404	Not Available	1270

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1777941	C1777941__gene_69893	F022002	SLPSYAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIILEVGTHAGSKDASYTVTGLNYARRPTQTVYMFFYKGHLQSIFFIFDGWDLLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRGFEYEGDSMSKNAYIAYTDKELDRARSAEKESEI
C1789601	C1789601__gene_75800	F067847	MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQAKEDGKFAEVEEKIKEAELNSL
C1805992	C1805992__gene_84455	F084362	MSLMNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVRVNNKPAGSLKDDKPSETEAEQKGFWWEK
C1821414	C1821414__gene_93152	F043991	VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFIFRVLEIAQGDPSNVHPDFRA
C1822434	C1822434__gene_93785	F018385	MMAENRWDPYAEVPIETHRDPVKDDPLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFDKEVN
C1828632	C1828632__gene_97528	F077403	FEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPRWSTNALRFYEERVRRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPYANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAEHSVATEAVVTESELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEATSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM
C1833075	C1833075__gene_100369	F040149	VADEGAKEFRWKVLIKEQGIPILFVEVVAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDTSVPKGHALTAVRERETVVMQLLNVHRMF
C1833075	C1833075__gene_100370	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA
C1836497	C1836497__gene_102793	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGK
SRS052604_LANL_scaffold_10869	SRS052604_LANL_scaffold_10869__gene_7421	F077403	MNTIMPLLRRLVLIILLLPSMCTVYAEERISVHFEVRWHRERNPMDTLGRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGCWQFLLPDWEASGRLRDERIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
SRS052604_LANL_scaffold_19404	SRS052604_LANL_scaffold_19404__gene_17680	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESELENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI