7000000484: Human stool microbial communities from NIH, USA - visit 1, subject 764447348

Overview

Basic Information

• IMG/M Taxon OID: 7000000484
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053035 | Ga0030496
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764447348
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 123555670
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055775	Metagenome	138	N
F068855	Metagenome	124	N
F078004	Metagenome	117	N
F090484	Metagenome	108	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1236716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	764
SRS016018_WUGC_scaffold_12766	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	7456
SRS016018_WUGC_scaffold_2404	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	22391
SRS016018_WUGC_scaffold_3221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10356

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1236716	C1236716__gene_123752	F068855	SKCPSSSVPTVEAQGPQVRKSLAPQGLQAEKESEDVNVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
C1265884	C1265884__gene_135807	F078004	LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKALTAGAVTVTGVLAAHHDVSLAAQTVL
SRS016018_WUGC_scaffold_12766	SRS016018_WUGC_scaffold_12766__gene_36442	F099406	MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPAVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLKSLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLADNYYSLDYFLEGRDFEGAFELKIVFVSFSDTNTGEGVSESDIEIHVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRAVTTLVNLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
SRS016018_WUGC_scaffold_2404	SRS016018_WUGC_scaffold_2404__gene_7535	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKEISHARVVSWLVDTTGDSPKYTIHIINANSEAVAAIALN
SRS016018_WUGC_scaffold_3221	SRS016018_WUGC_scaffold_3221__gene_10488	F090484	ITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEFVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL