7000000482: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159753524

Overview

Basic Information

• IMG/M Taxon OID: 7000000482
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053033 | Ga0031036
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159753524
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73021428
• Sequencing Scaffolds: 20
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces longisporoflavus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F044555	Metagenome / Metatranscriptome	154	N
F047127	Metagenome	150	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064817	Metagenome	128	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F071327	Metagenome	122	N
F081454	Metagenome	114	N
F085821	Metagenome	111	N
F094005	Metagenome / Metatranscriptome	106	N
F097525	Metagenome	104	N
F101357	Metagenome / Metatranscriptome	102	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1577321	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	767
C1599092	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1235
C1600608	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	1299
C1606109	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1621
C1609190	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1909
C1611496	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2229
C1613285	All Organisms → cellular organisms → Bacteria	2580
C1614958	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3115
C1616293	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3837
C1617135	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	4693
C1617811	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	5799
SRS016541_Baylor_scaffold_13346	All Organisms → cellular organisms → Bacteria	6865
SRS016541_Baylor_scaffold_15419	All Organisms → cellular organisms → Bacteria	13110
SRS016541_Baylor_scaffold_20323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces longisporoflavus	3046
SRS016541_Baylor_scaffold_26807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1728
SRS016541_Baylor_scaffold_28426	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1724
SRS016541_Baylor_scaffold_28632	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	723
SRS016541_Baylor_scaffold_30771	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	5278
SRS016541_Baylor_scaffold_35213	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2399
SRS016541_Baylor_scaffold_35757	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2718

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1577321	C1577321__gene_108849	F042387	MTGLFLISCSRENDKMTNETLANSAKMQLPTKVIIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNSSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIQKSINLYGSG
C1599092	C1599092__gene_118852	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEELTRNLKDLCEYKIRKFFFQNIDETIEMVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIEKCK
C1600608	C1600608__gene_119574	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGNEIVNIPVKGRYKKKLKALLSDKPEIA
C1606109	C1606109__gene_122267	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETTKSLSKLI
C1609190	C1609190__gene_123809	F081454	MKVFKLVLLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQGNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNINEETKKILVESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKI
C1611496	C1611496__gene_125009	F101359	MKKFLSKRSILVGALALVLGFIISSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQSITDSYKETVK
C1613285	C1613285__gene_125992	F030786	MKRTKIHKVVFQMLVVMIVTSSLQMLLKNGSATKGGNTMGTKKISLADITEGDDSTEGVLKVKYFDDGVDKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
C1614958	C1614958__gene_127000	F064818	MDKDEFLKELITFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHNYYGFPIMTNDDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSLDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
C1616293	C1616293__gene_127817	F061927	MKKSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDNRIEKAISSCIGE
C1617135	C1617135__gene_128336	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWMINTENKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C1617811	C1617811__gene_128773	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISDVLRKTSFFSMLLLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALVAALLFEYAYPWRIIFG
SRS016541_Baylor_scaffold_13346	SRS016541_Baylor_scaffold_13346__gene_16359	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDAFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
SRS016541_Baylor_scaffold_13346	SRS016541_Baylor_scaffold_13346__gene_16362	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
SRS016541_Baylor_scaffold_15419	SRS016541_Baylor_scaffold_15419__gene_19576	F063778	MPETISEGAKQQLLQQLQNALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAIDNIEAIPLDPPPED
SRS016541_Baylor_scaffold_20323	SRS016541_Baylor_scaffold_20323__gene_26525	F044555	KTMKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNIPMVPDLEKPIEIQVSTIRRIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
SRS016541_Baylor_scaffold_26807	SRS016541_Baylor_scaffold_26807__gene_36127	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETPEKVITLDKKLKKLIEKLNE
SRS016541_Baylor_scaffold_28426	SRS016541_Baylor_scaffold_28426__gene_38501	F041827	LLLSCNRDNETNENPAPQNEKLVLLDKLSEGSTVIFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLAFSHAISTEFYPGTGLTPRCSIEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDKQGNVVQTIEYYNTKNALRNIKGFPALVVEFYIRPITYELPYYNHGIERIEDLRFIDNVKTRDFHDDDYMLYKYDDDKGNSYDGDYPTKIFVFDKSHNDPTYSHQLWMFNASRYYIKEE
SRS016541_Baylor_scaffold_28632	SRS016541_Baylor_scaffold_28632__gene_38821	F041827	LLLSCNRDLENNENNETPAPPKEERLVLASLFEYVSNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVMKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRY
SRS016541_Baylor_scaffold_30771	SRS016541_Baylor_scaffold_30771__gene_42406	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRDRKDNFEDWLKVEVKVKDDIEGKYYTRVSECMLFSEVLGLLEWFEQISVDKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPISYDEEPYQLTFSLDDKTLAMIIKELGEAVASFKKE
SRS016541_Baylor_scaffold_35213	SRS016541_Baylor_scaffold_35213__gene_51888	F085821	KMSNIFEQLTTLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK
SRS016541_Baylor_scaffold_35757	SRS016541_Baylor_scaffold_35757__gene_53841	F054111	MVFNNLEKESMNKPLDSITHEVFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSL