7000000479: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763435843

Overview

Basic Information

• IMG/M Taxon OID: 7000000479
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053030 | Ga0031027
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763435843
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88161634
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047508	Metagenome	149	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F063778	Metagenome	129	Y
F064819	Metagenome	128	N
F081456	Metagenome	114	N
F090516	Metagenome	108	N
F097526	Metagenome	104	Y
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2587730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	500
SRS015803_WUGC_scaffold_12645	All Organisms → cellular organisms → Bacteria → Proteobacteria	2838
SRS015803_WUGC_scaffold_12739	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	798
SRS015803_WUGC_scaffold_19051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1354
SRS015803_WUGC_scaffold_19574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	2090
SRS015803_WUGC_scaffold_29785	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	938
SRS015803_WUGC_scaffold_38264	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	875
SRS015803_WUGC_scaffold_40421	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1222
SRS015803_WUGC_scaffold_45634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1471
SRS015803_WUGC_scaffold_47569	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2812
SRS015803_WUGC_scaffold_6548	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	788

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2587730	C2587730__gene_121128	F047508	GHRLVEGRVKYPYLRNLGEYLRHGFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELI
SRS015803_WUGC_scaffold_12645	SRS015803_WUGC_scaffold_12645__gene_15301	F097526	MTTNDTKAITIYTQDDYRQLCERLDDDTVTALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLARQCEQNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRYITTALGSEVQGKPQ
SRS015803_WUGC_scaffold_12739	SRS015803_WUGC_scaffold_12739__gene_15400	F058221	LSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
SRS015803_WUGC_scaffold_19051	SRS015803_WUGC_scaffold_19051__gene_23492	F064819	FSMILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISMETMVSEENLDIERSDLEDLTRNLKDLSEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIVTFSKEISQEIEKCK
SRS015803_WUGC_scaffold_19574	SRS015803_WUGC_scaffold_19574__gene_24165	F097526	MATTIYTQDDYRRLCERLEDDTVVVTLRAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKAGRNGHPTPEEQARRERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRCDTDTELSVARDDAYGFAAALRDIPLNEKQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVREKPQ
SRS015803_WUGC_scaffold_29785	SRS015803_WUGC_scaffold_29785__gene_37773	F090516	MKSNLSVELFLAFERYFIENDEEVSLDKISSGFTDVVLGIEFLPQNMIEDIDKKKKLLKKYGFSSSTALAEDFRKRVLNIDEPIPEDFEKDGVGYVYTFISGYDTFYNRMYVFGIHCFGDCFEVTYFDLDNDAGAGDYYKGLEFYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLF
SRS015803_WUGC_scaffold_38264	SRS015803_WUGC_scaffold_38264__gene_50514	F081456	PIYYILISLIFLIVFGAISFATWLVWLTNVAFFAKLVVTAIGFLLCAFTVILYTISAE
SRS015803_WUGC_scaffold_40421	SRS015803_WUGC_scaffold_40421__gene_53803	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVLTNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS015803_WUGC_scaffold_45634	SRS015803_WUGC_scaffold_45634__gene_62193	F063778	MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAAAGHQLTEVMLQELTTAREHLKSCANQIEHAISNVKAIPLDPPPED
SRS015803_WUGC_scaffold_47569	SRS015803_WUGC_scaffold_47569__gene_65850	F101360	VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPRIDGLQIGTVSVSTPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFAAVAALDGFIKQTGEVPDGVEVVQGAPRISVRISTPQEEAIRDLISTGDISLLEIEGGDA
SRS015803_WUGC_scaffold_6548	SRS015803_WUGC_scaffold_6548__gene_7735	F059076	MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVIT