7000000471: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764062976

Overview

Basic Information

• IMG/M Taxon OID: 7000000471
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053022 | Ga0031121
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764062976
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111376546
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → Viruses → Predicted Viral	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F049707	Metagenome	146	N
F057446	Metagenome	136	N
F063778	Metagenome	129	Y
F064819	Metagenome	128	N
F067846	Metagenome	125	Y
F067847	Metagenome	125	N
F070224	Metagenome	123	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F097490	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4035172	Not Available	532
C4042893	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	554
C4064864	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	632
C4068423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	647
C4097829	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	835
C4120005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1154
C4127152	Not Available	1365
SRS064449_LANL_scaffold_14923	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1374
SRS064449_LANL_scaffold_20555	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	14009
SRS064449_LANL_scaffold_2213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1709
SRS064449_LANL_scaffold_40718	All Organisms → Viruses → Predicted Viral	2417
SRS064449_LANL_scaffold_66438	All Organisms → Viruses → Predicted Viral	4518
SRS064449_LANL_scaffold_70097	All Organisms → Viruses → Predicted Viral	3557

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4035172	C4035172__gene_160518	F022002	LPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIRTEGTQAGSDEQAYAVEGLKYARRSTFLVTLHFCKGYLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKFIFDAFTHLEVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI
C4042893	C4042893__gene_163689	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLIRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDEIYMNSINFSFQTDLNGIATFSKEISQEIEKCK
C4064864	C4064864__gene_172971	F097490	MKINENKKEVLVEIRNNTENNYYLLSPVVSIMTKYLQHIGGEMIEGQIHHKKIDNIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNLFSNSKENKKMYFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C4068423	C4068423__gene_174523	F067847	KTTSRSTERKPSMFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL
C4097829	C4097829__gene_187861	F049707	VVSEYRSPHNDGHDPYILIWEYGSEVQQAEFSERWAEYEPDTGWTVWHFRLDDGRVMKFRALEWEQKDDVNHLTTIYFTPKKEQQ
C4120005	C4120005__gene_199155	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLCLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C4127152	C4127152__gene_203127	F070224	MKRLLFLLLTLPHCTAWSQRYNAPDSIYIIRSGIYIPPVSGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAESPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLGEVDRWQHPHL
SRS064449_LANL_scaffold_14923	SRS064449_LANL_scaffold_14923__gene_15147	F081456	MFEEPPIYYILISLIFLIVFGAISMATWMVWLTAISFFAKLVITAIGFLLAAMTVILYTISAE
SRS064449_LANL_scaffold_20555	SRS064449_LANL_scaffold_20555__gene_21089	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFGERWAEYDETGWTVWYFRLVDGGVMTFSAREWEQRDDVNHLTTIWMKPSLYDIERKTS
SRS064449_LANL_scaffold_2213	SRS064449_LANL_scaffold_2213__gene_2181	F063778	MPETISEGAQQQLLHQLQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED
SRS064449_LANL_scaffold_40718	SRS064449_LANL_scaffold_40718__gene_43276	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTATVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK
SRS064449_LANL_scaffold_66438	SRS064449_LANL_scaffold_66438__gene_76483	F027205	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK
SRS064449_LANL_scaffold_66438	SRS064449_LANL_scaffold_66438__gene_76484	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS064449_LANL_scaffold_66438	SRS064449_LANL_scaffold_66438__gene_76485	F074985	VELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS064449_LANL_scaffold_70097	SRS064449_LANL_scaffold_70097__gene_84022	F067846	MESLQAQWERKTLSDYDRRCCAEDAYNEAVEREMENIEEDISNGDSDAICAFREKMLDYDEVISAFDDDTFNDDEFIKAVALSTDYEEMRIKILTAMAEDKLEQLEEDYKNGYILND