7000000469: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 1

Overview

Basic Information

• IMG/M Taxon OID: 7000000469
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053020 | Ga0031022
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89262213
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F061926	Metagenome	131	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081454	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2610939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1420
SRS015440_WUGC_scaffold_22925	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2387
SRS015440_WUGC_scaffold_34594	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	20922
SRS015440_WUGC_scaffold_43698	All Organisms → Viruses → Predicted Viral	1626
SRS015440_WUGC_scaffold_50613	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1369
SRS015440_WUGC_scaffold_61548	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1063
SRS015440_WUGC_scaffold_83006	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2892
SRS015440_WUGC_scaffold_9401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	857

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2610939	C2610939__gene_158345	F040149	VADEGAKEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWSHDSEDAIDYFIYDASVPKGHALTGVRE
SRS015440_WUGC_scaffold_22925	SRS015440_WUGC_scaffold_22925__gene_25808	F045567	MRQRDGRDTLTEELEGGITPLLYRTEGEARRAWVRMVTEDVVHTSTHRVKDALLPVDGDILTPCDGTHIVQTERVVVVLVSQENSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS015440_WUGC_scaffold_34594	SRS015440_WUGC_scaffold_34594__gene_41901	F081454	MKTFKLILLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKYKIDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTYKAKSVVTQQKIK
SRS015440_WUGC_scaffold_43698	SRS015440_WUGC_scaffold_43698__gene_54968	F074985	GWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYARRTTKLRIVTDPTTGEQKYLLDHIKAMHID
SRS015440_WUGC_scaffold_50613	SRS015440_WUGC_scaffold_50613__gene_64815	F027205	VASRLIVSADDILKAVKESEAFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYILDEYDIPRRIKRSTK
SRS015440_WUGC_scaffold_61548	SRS015440_WUGC_scaffold_61548__gene_80650	F053092	MQSDQGLILGLTHELLVLRALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
SRS015440_WUGC_scaffold_83006	SRS015440_WUGC_scaffold_83006__gene_117058	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS
SRS015440_WUGC_scaffold_9401	SRS015440_WUGC_scaffold_9401__gene_8347	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS015440_WUGC_scaffold_9401	SRS015440_WUGC_scaffold_9401__gene_8348	F071329	AGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED