7000000466: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763901136

Overview

Basic Information

• IMG/M Taxon OID: 7000000466
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053017 | Ga0031124
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763901136
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 164804937
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F033081	Metagenome	178	Y
F045567	Metagenome	152	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F068942	Metagenome	124	N
F076191	Metagenome	118	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F095632	Metagenome	105	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4164529	Not Available	511
C4166297	Not Available	514
C4196447	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	584
C4219558	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	658
C4281975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1121
C4306309	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1823
C4314557	All Organisms → Viruses → Predicted Viral	2471
SRS063603_LANL_scaffold_104127	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2978
SRS063603_LANL_scaffold_13622	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3634
SRS063603_LANL_scaffold_20674	Not Available	622
SRS063603_LANL_scaffold_26113	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	813
SRS063603_LANL_scaffold_37050	All Organisms → Viruses → Predicted Viral	1280
SRS063603_LANL_scaffold_3721	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	529
SRS063603_LANL_scaffold_43257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1400
SRS063603_LANL_scaffold_66217	All Organisms → cellular organisms → Bacteria → Proteobacteria	8756
SRS063603_LANL_scaffold_98673	All Organisms → Viruses	44466

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4164529	C4164529__gene_238759	F068942	MIRKILSLPTLALCFTLCTALFAGCGENYEGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHDIPEVDKDTAYYKDIVIYLTRNKREETTTLKLVAPPNRTQQ
C4166297	C4166297__gene_239462	F068942	MIRKILSLPTLALCFTLGSAFFAGCNEDYIKNTETKVRWSNVKNPKYGDPINITLKAEGETFTTVGDHSSISFSNNVSTLDTFTRHDFSKVDKDTAYYKDIVIYLTRNEREQTTTLKLVAPPNRTQQ
C4196447	C4196447__gene_250776	F101359	KNLIFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQNFTDSYKETVK
C4219558	C4219558__gene_259486	F101358	MTKKHSAPLPPQQEHLLTQPITMDGMPKERTTHPDTHIIPKHENVPQYLWNVLRSSGQLDEGWIDTEIIDENDVVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNTYLQKAYGVMIKDGRLQPVADTTHVTTSSQEQQTEILPAQGGDTYEHLSRDSAR
C4281975	C4281975__gene_283913	F103431	MINLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNATAAAFDGAFGEDIADCHAEDDNDKNAESQKEGFHVCIPEG
C4306309	C4306309__gene_294061	F045567	MVTEDVVHTGTHRVEDALLPIDGDILTPRDGTYIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHG
C4314557	C4314557__gene_297618	F076191	MKIITENPAEEALLWRIKALSDELVDQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYENPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDDA
SRS063603_LANL_scaffold_101239	SRS063603_LANL_scaffold_101239__gene_129543	F022002	IILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI
SRS063603_LANL_scaffold_104127	SRS063603_LANL_scaffold_104127__gene_135865	F033081	MYPPDLMVVHRPRKGIMAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGVAGVLLIGDFTNYTKQQKALHSLKATRCEAYNTLLLFALWEEQAFRSGSERWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVTAAVYLAINIAKML
SRS063603_LANL_scaffold_13622	SRS063603_LANL_scaffold_13622__gene_12665	F101358	MTEKHSASLPPRQPEHLLTQPITTDGTPQERATHLDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREITDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNVDFTNAYLQKAYGVMMEGGKLQPVADTTHATTSSQEQQTEVLPAQGEDAHDHLGGDSARQLVGSVAAKASGGEMDNSPLVQRALERVR
SRS063603_LANL_scaffold_20674	SRS063603_LANL_scaffold_20674__gene_20233	F085821	MNGIFERLAALAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWIFMEPVYYLKYFISDASTQKKLHHNLLNLWYESTKRQILEQDNGKHDEAYIDAWVKANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLY
SRS063603_LANL_scaffold_26113	SRS063603_LANL_scaffold_26113__gene_25948	F089056	MNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTTEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS063603_LANL_scaffold_37050	SRS063603_LANL_scaffold_37050__gene_37965	F051214	ELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
SRS063603_LANL_scaffold_3721	SRS063603_LANL_scaffold_3721__gene_2710	F018385	MADLINSWLPYQELSIEKDRDPVLDDPIIYGNNVKNFTVTVYSPDGRVSKYWNARILKDLTGYCRIACPRDGKILNFNWFNWTVYMFSQSGMNALVFMPDSGKRTVTSLSKEVK
SRS063603_LANL_scaffold_43257	SRS063603_LANL_scaffold_43257__gene_45096	F051212	LHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDKKTITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWNYITKQVIDIKYSKLYNHLNLEK
SRS063603_LANL_scaffold_66217	SRS063603_LANL_scaffold_66217__gene_74499	F051211	MRVKKAIRIFEKIRNLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTAAMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
SRS063603_LANL_scaffold_98673	SRS063603_LANL_scaffold_98673__gene_124275	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLSETIDSLQTSQTN
SRS063603_LANL_scaffold_98673	SRS063603_LANL_scaffold_98673__gene_124295	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIDRKEN