7000000462: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158337416

Overview

Basic Information

• IMG/M Taxon OID: 7000000462
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053013 | Ga0031227
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158337416
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 141701498
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046431	Metagenome	151	Y
F046433	Metagenome	151	N
F064819	Metagenome	128	N
F076191	Metagenome	118	N
F078842	Metagenome	116	N
F080165	Metagenome	115	N
F092230	Metagenome	107	N
F095630	Metagenome	105	N
F095633	Metagenome	105	N
F097490	Metagenome	104	N
F103430	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2678845	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	698
C2700690	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	865
C2703326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	891
C2709840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	967
C2714530	Not Available	1033
C2731042	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1390
C2737716	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1630
C2745304	All Organisms → cellular organisms → Bacteria	2071
C2756594	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3722
SRS012279_Baylor_scaffold_21442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12277
SRS012279_Baylor_scaffold_45475	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1700
SRS012279_Baylor_scaffold_62183	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	977
SRS012279_Baylor_scaffold_64696	All Organisms → Viruses → Predicted Viral	2593

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2678845	C2678845__gene_176593	F095633	MKNYENSTEVGRREGLTEGELRTMGMLAMEATEELKKTTIRKEAVLLGNVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDGGEMSLEEHSVPEEVFIDLSRTRCVVDADRSHKSYEFTCPVLKKFPDGELYPIREAYVISAIDVNGSQEVDFKII
C2700690	C2700690__gene_184937	F033081	MYPPDLIMVHRPQKGVMAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRLKFSILAVGLIIMTIATIKILLFVPGLNQSVVSLLTRGLETLLPARWATGAAWIVGTTGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
C2703326	C2703326__gene_185987	F095630	GGYFLDSKETNRMIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEVQDAYNEALRLFDKWNIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIRKKHTVYDRGDQWSEASKSVGYRTFLGISKKDGSIVHQLKNEFMEYVQFLSASPFCGNLQVALVRCSHNYEQVLLGRDTLNSILGGCVV
C2709840	C2709840__gene_188592	F046431	MKNRIRKSIKLVTIFCILLSVIIAYSNVLVSWAAVDSELTITPKPETNNMHLKWTGPLNSTYRVFQKKPGSNHFETIGLTDFSPEAINEEVKVLNIYPTADNNNTALSASGMAIPNVTVTYLDGQTETIPKSALLKAWMEGRNSK
C2714530	C2714530__gene_190429	F076191	IAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENAHHYKKPMTCIRSTHDNRELKDVIHLLILAGGNEIPSNHYGVLRNE
C2731042	C2731042__gene_197483	F080165	NKKDKIMKSIKILLLLLSLTACNNKTKTISTLDLEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C2737716	C2737716__gene_200627	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASLSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSRSPFCDNLQAALVRCSHNYEQVLLDRGALNSILGGCVIGGKGWLKMADNTLIGQILKAIEIDVYDI
C2745304	C2745304__gene_204488	F097490	MELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMREIVLLPKKSVKKIKYKYDNEEYIEIVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C2756594	C2756594__gene_211044	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERTDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQEIKKYK
SRS012279_Baylor_scaffold_21442	SRS012279_Baylor_scaffold_21442__gene_30959	F092230	MRQAHKRMVDKLKTHLLKVFFPLFIVCIIFVAFFRQIGCGSEGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSAEVSDSSSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV
SRS012279_Baylor_scaffold_45475	SRS012279_Baylor_scaffold_45475__gene_65625	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVITAFLLALVVQKIRVLFGGITASVFAVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVSYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIISKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS012279_Baylor_scaffold_62183	SRS012279_Baylor_scaffold_62183__gene_94050	F046433	MSELSASLDVLDVLNPVTPPDLTLQARDTSRNNPVTYVAEDGYRGTRTSAPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNGLVFLGMSELHFAVTALAKRLRHHLEVDNKPVYVDVGNLLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQIKERIAGFEVDNNPGAHKVSVLVMAASSKYIDNGIGADPLWGKATYPVEAYYRLKNDHDDRGMSRVTGIHSSTDRTFGCEVDDIAYLAIDGGILKGERID
SRS012279_Baylor_scaffold_64696	SRS012279_Baylor_scaffold_64696__gene_100873	F103430	MIEQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI