7000000455: Human stool microbial communities from NIH, USA - visit 1, subject 158499257

Overview

Basic Information

• IMG/M Taxon OID: 7000000455
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053005 | Ga0030461
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 158499257
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 206330030
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F067720	Metagenome	125	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C5151951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1747
C5158865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1954
C5184484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4038

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5151951	C5151951__gene_301392	F013656	MNKKIYKEPLKSETETTINVLYGENILSIYTNQVKLQKQLNKILGEPTKEYKIKRSISGSLWDIPLNDKVKIQKVIIKANIYEL
C5158865	C5158865__gene_308444	F067720	MASATYEHFVDVNKMLAIHERFLDLTKTSHLGSVTVMVRNAGELPQPFWLGAACGGGSRSLSASVARA
C5184484	C5184484__gene_343220	F013656	MNDIKKIYKEPIKEEMETTINVLYKEKKLAIYTNKVDLQKQLNKLIGKPIKEYKIKRSIGGSLWEIALDDKIKIQKVIVKANIYEL