7000000447: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 7000000447
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052997 | Ga0031011
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89701810
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F081454	Metagenome	114	N
F095632	Metagenome	105	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3532194	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	825
SRS013949_WUGC_scaffold_10183	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1373
SRS013949_WUGC_scaffold_1099	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	593
SRS013949_WUGC_scaffold_40743	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	811
SRS013949_WUGC_scaffold_62436	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7712
SRS013949_WUGC_scaffold_62469	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	29208

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3532194	C3532194__gene_153142	F105380	MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTSVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIK
SRS013949_WUGC_scaffold_10183	SRS013949_WUGC_scaffold_10183__gene_10761	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMEDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK
SRS013949_WUGC_scaffold_1099	SRS013949_WUGC_scaffold_1099__gene_1028	F057446	SYPEYFEIADNKKTNKQLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGNKKRKIDGFSQEEAEQIIKFLMNNR
SRS013949_WUGC_scaffold_40743	SRS013949_WUGC_scaffold_40743__gene_44817	F059076	MTNRILLLGLLLGGVSINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYQGLPINNMSILTLTISNVKGDWISSFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGNNTPSVKHGTDNYGVTTAPATVLLKQHGANWAIYADYPNIGSYEFTSGSTAIGKLVNGTWVI
SRS013949_WUGC_scaffold_62436	SRS013949_WUGC_scaffold_62436__gene_76981	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDKTGWTIWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKTS
SRS013949_WUGC_scaffold_62469	SRS013949_WUGC_scaffold_62469__gene_77205	F095632	MIMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLADTIDSLQTPQTN