7000000444: Human stool microbial communities from NIH, USA - visit 2, subject 763901136

Overview

Basic Information

• IMG/M Taxon OID: 7000000444
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052994 | Ga0030602
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763901136
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133303628
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F078004	Metagenome	117	N
F078822	Metagenome	116	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2581986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2645
SRS063985_LANL_scaffold_22860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1037
SRS063985_LANL_scaffold_48934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1793
SRS063985_LANL_scaffold_5254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1620

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2581986	C2581986__gene_207421	F078822	HFFDIFLSFPNAFSKAFHPYAVRFPAAFLLVHRFYLAFEELLSCVTAYL
SRS063985_LANL_scaffold_22860	SRS063985_LANL_scaffold_22860__gene_37759	F092227	YSMNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY
SRS063985_LANL_scaffold_24474	SRS063985_LANL_scaffold_24474__gene_40635	F078004	MVLFPVCFLFFCKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
SRS063985_LANL_scaffold_48934	SRS063985_LANL_scaffold_48934__gene_92989	F044554	RSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFASDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
SRS063985_LANL_scaffold_5254	SRS063985_LANL_scaffold_5254__gene_6377	F092227	YSMNEQKHKRLLRIGCLLLAGLFALSLLGSVLMMLLF