7000000443: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615

Overview

Basic Information

• IMG/M Taxon OID: 7000000443
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052993 | Ga0031062
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133639245
• Sequencing Scaffolds: 26
• Novel Protein Genes: 28
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F043990	Metagenome	155	N
F046432	Metagenome	151	Y
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064819	Metagenome	128	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F077404	Metagenome	117	N
F080165	Metagenome	115	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F103430	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2837384	All Organisms → cellular organisms → Bacteria	816
C2859561	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1052
C2881633	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1620
C2893563	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2700
C2894151	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2820
C2895445	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3139
SRS058808_LANL_scaffold_14277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	70253
SRS058808_LANL_scaffold_16319	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1037
SRS058808_LANL_scaffold_24447	All Organisms → cellular organisms → Bacteria	9046
SRS058808_LANL_scaffold_35184	Not Available	35737
SRS058808_LANL_scaffold_37471	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2316
SRS058808_LANL_scaffold_48300	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2106
SRS058808_LANL_scaffold_49781	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	4656
SRS058808_LANL_scaffold_54500	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1128
SRS058808_LANL_scaffold_56437	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2691
SRS058808_LANL_scaffold_5901	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	5507
SRS058808_LANL_scaffold_62720	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2859
SRS058808_LANL_scaffold_67596	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	685
SRS058808_LANL_scaffold_68586	Not Available	4842
SRS058808_LANL_scaffold_7039	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	564
SRS058808_LANL_scaffold_70572	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1608
SRS058808_LANL_scaffold_72139	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1912
SRS058808_LANL_scaffold_73274	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9384
SRS058808_LANL_scaffold_75617	All Organisms → Viruses → Predicted Viral	2493
SRS058808_LANL_scaffold_76285	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	29854
SRS058808_LANL_scaffold_76290	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10947

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2837384	C2837384__gene_210336	F061927	MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCKCAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE
C2859561	C2859561__gene_219469	F077404	SGSLPKGTYSDWKYKNPFAMNILKTVFAFFFALCFIRGANGYAQKIESINAEASKRELKRNAIYIPPALEQYTDTTLLHQKFNVENKDNYLYTPFTKDNEPSIPFNYGFLHPLDERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKMADLKYLDFRHIKSDFSYGHPYQGFTHSDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGKTTLYLYFLMIDSVAVNFDTEVLPYIKGVFRFNRVQ
C2881633	C2881633__gene_229344	F097525	IMFKIQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYDEEPYQLTFSLDDKTLAMIIKELGEAVASFKKE
C2893563	C2893563__gene_235185	F095632	MTMSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN
C2894151	C2894151__gene_235517	F095630	MRYSPLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFILSDIILTAKTYGDTCCMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKRDELMPNLRILQSSEWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSNKLFSECVLEYSVDEEHIKSPIDQALAAIVVQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKRIASQLKSEFAAYIQYLLKLPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
C2895445	C2895445__gene_236192	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQILTLKILIIALASALLFEYAYPWRLIFG
SRS058808_LANL_scaffold_14277	SRS058808_LANL_scaffold_14277__gene_15273	F097526	MTKGFIPGAGDMTADNTTAIAPYTQDGYRLLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAGEMEKAGRNGHPDPAEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRHIAAREPENAAVMPAVALEPVVTLQAAEQPEITIHNPTTGATL
SRS058808_LANL_scaffold_16319	SRS058808_LANL_scaffold_16319__gene_17716	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAIIIKELGEAVASFKKV
SRS058808_LANL_scaffold_24447	SRS058808_LANL_scaffold_24447__gene_27964	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVFLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHKRHVILRVFIEGSTYDIDPSIDIGLASTLPIAHWDSTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYIAIDKWLADTRAHQSS
SRS058808_LANL_scaffold_35184	SRS058808_LANL_scaffold_35184__gene_42301	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNTNHEAFTLDYPVVGYWRGEAEETAVLYLSDERQKVMNTLSELKEVLDQEAIAYQIENDLQLI
SRS058808_LANL_scaffold_37471	SRS058808_LANL_scaffold_37471__gene_45319	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEVVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIVTFSKEISQEIEKCK
SRS058808_LANL_scaffold_48300	SRS058808_LANL_scaffold_48300__gene_60329	F063777	LKVLNIKISALPPENNSFWMRLLFYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKISKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCVKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQENIGNYILLQNLILEDNQLKNQLISFDKNTGKMRVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE
SRS058808_LANL_scaffold_49781	SRS058808_LANL_scaffold_49781__gene_62465	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG
SRS058808_LANL_scaffold_54500	SRS058808_LANL_scaffold_54500__gene_69192	F057446	SISFGKTTITSYPEYFEIVDNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESRIEKSKIKEIVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS058808_LANL_scaffold_56437	SRS058808_LANL_scaffold_56437__gene_71861	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEKDSLKYTFTRYILR
SRS058808_LANL_scaffold_5901	SRS058808_LANL_scaffold_5901__gene_5452	F054111	MVFNNLEKESMNKPMDSITHEVFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ
SRS058808_LANL_scaffold_62720	SRS058808_LANL_scaffold_62720__gene_81047	F059076	MTNRILLLGLLLGGISTNAQTINEINAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVGSAMDADLGGNTATSTSYTDYRPLMVDAVGDVYRGLPINNMSILTLTISNVKGDWIASFDTGIDYDKYAVAIMSATFKMPAPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGQLVNGTWVITLLVGKRDAVNFTELEFPQGGANSGIGTSNPTYRAGLESFLQKLE
SRS058808_LANL_scaffold_67596	SRS058808_LANL_scaffold_67596__gene_89279	F057446	MNSISFGKTTVTSYPEYFEIADNKKTNKLLYLSASLVFIAIYLFDLYQNEFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQEEAEQIIKF
SRS058808_LANL_scaffold_68586	SRS058808_LANL_scaffold_68586__gene_91153	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILENGIHAGSNDVDYTVTGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLIVRGFKHEGHFGFKDAYITYSDDELDRARSAEKESEI
SRS058808_LANL_scaffold_68586	SRS058808_LANL_scaffold_68586__gene_91154	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFDDLKILEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELERAYSAENENEI
SRS058808_LANL_scaffold_68586	SRS058808_LANL_scaffold_68586__gene_91155	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFGFDGWDVLEQIESELEDKYGKMIESEGMFKKKVIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI
SRS058808_LANL_scaffold_7039	SRS058808_LANL_scaffold_7039__gene_6800	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVVNKKNITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKYSKLNNHLNLEK
SRS058808_LANL_scaffold_70572	SRS058808_LANL_scaffold_70572__gene_95138	F059076	MTHKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSAMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE
SRS058808_LANL_scaffold_72139	SRS058808_LANL_scaffold_72139__gene_98575	F043990	MKKKIFIFTVVCILPVVIILPIINNKIECYGIERNFGVNMSDIGFNEKYREEEWAPNGDGKKIIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDGDFGILIVDLKNKEICIYYQIF
SRS058808_LANL_scaffold_73274	SRS058808_LANL_scaffold_73274__gene_101233	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIIGFGDTLILENGFVYKADRYPNAKEYELYYKGTGEEITKEDFNSIKFSRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEAKMIH
SRS058808_LANL_scaffold_75617	SRS058808_LANL_scaffold_75617__gene_108402	F105377	VRSEVRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNSWKAIETLLQQNDVRDITVASFGLKRFEEILDAIAMMHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI
SRS058808_LANL_scaffold_76285	SRS058808_LANL_scaffold_76285__gene_112695	F046432	MQMTENELSEVISRFQMPQGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREEGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS
SRS058808_LANL_scaffold_76290	SRS058808_LANL_scaffold_76290__gene_112785	F049707	VVSEYKSPHNDGHDPYILIWEYGTEVQQAEFTERWAEYEPDTGWTVWHFRLDDGRIMTFRALEWEQKDDVNHLTTIYFVPKEKRDS