7000000442: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 765094712

Overview

Basic Information

• IMG/M Taxon OID: 7000000442
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052992 | Ga0031325
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 765094712
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102358025
• Sequencing Scaffolds: 5
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F081510	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092230	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1816074	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1163
SRS051791_LANL_scaffold_14453	Not Available	1087
SRS051791_LANL_scaffold_26253	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56322
SRS051791_LANL_scaffold_33739	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	233400
SRS051791_LANL_scaffold_44027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	696

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1816074	C1816074__gene_156930	F046433	MIELLTSPGALSELSPVAPPKLLSQARDTSRNNPVTYVVDDGYMGTRTSDPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLKVDNNPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQMRERISVFGAYNNPGAHKVSVLVMAASSNCIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
SRS051791_LANL_scaffold_14453	SRS051791_LANL_scaffold_14453__gene_28645	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDKSRQAVDEYVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRL
SRS051791_LANL_scaffold_26253	SRS051791_LANL_scaffold_26253__gene_51855	F081510	MKFDLNAVKATAKTTWVTTKILGKKYAPVILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEQMEADGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVNVDGEDIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYIEWDAHEVWNDDKQEYEVQFYVRWKTPRNLYATTNFHDFVPKKTRKELN
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67466	F089057	MINVIPLIAKKYNRKGDTSGSLKSLIDDLNCIGDTDDVLLFLTSIPRETKYSLAEAFSVIVSNDEYRNIFRTSIVFLNIDLDYHELLLTAIKSESYDIICMINKAIPTPDLFLAKNNYECLTIALDKLYAIFDKVLGMVVGQIKHTASSKEGRALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRTVLSRYLNNM
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67507	F099452	MDKTYAELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNVFNLYKEIVNLDDVSLLNDLRKTSWYKDWFISDKRNSDLIDLSKFNFRSLERFEKESYLKDVEHYDFKKVIEVDSYSLYDTLSEENGVDLFKLAAENILINHGFFNNTDYNLYDIPDKYMEDIEVSLYMCLLNSGNMDFMDKKTFKSTELFYIVKNNICGTIFFTLFDRMNEDTRTRAR
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67554	F092232	MNTQAKFIAEYNDKNRPKFNDKFFNKSDDDIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTASSAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLDKFNFEDVIKISDHDLNDPEYYTFAIANAHMKTPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHVKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDENFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPTAVAFDADLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67568	F095629	MTFKERMMRELIICICLIGCFSIANANNIEQPKDVKIVHNDDSVILHKKIYQLEKRIERLEELLKKEDK
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67573	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLDKITQLQPSKENPEIAIHRPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINVGRYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67597	F092229	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPVVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIFFRYFNSELIDGLFKLGQSTKVLDLAIEYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLDEYREEGRFIYGTKEYKILKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67615	F099453	MLRRKDMNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCIKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLGNIIYTPKYPIAIAMAKLEYMLGKKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYAVEYLEYGNSKLVIKITQGA
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67617	F080166	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTTHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEEAINICDPENKMSPFKRLYSTTGDLLDIKCNSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAMTPLLGSNRQNMLK
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67618	F081455	MENFLTKEISALISKHFEFTNNSDLIKDPIISDDNIIDFPPVEEIGAEKVNMSDIIDCVQEALQQPLENKDTSIAVNFSQMINKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAIRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKDLVIRLSTVINGTTKYYADIYPDLNKIDLDHHLISSAKK
SRS051791_LANL_scaffold_33739	SRS051791_LANL_scaffold_33739__gene_67647	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGSNGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMTNNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
SRS051791_LANL_scaffold_44027	SRS051791_LANL_scaffold_44027__gene_88086	F092230	MVDKLKAHFLKVLLPLFIVCVIFVAFFRQIACGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGNVEVSDSTSTGEVQNTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAITIGYYSYLK