7000000434: Human stool microbial communities from NIH, USA - visit 1, subject 763536994

Overview

Basic Information

• IMG/M Taxon OID: 7000000434
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052984 | Ga0030477
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763536994
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111739708
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F056682	Metagenome	137	Y
F068811	Metagenome	124	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1988365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1709
SRS014287_WUGC_scaffold_10837	Not Available	787
SRS014287_WUGC_scaffold_30067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2808
SRS014287_WUGC_scaffold_35445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5622
SRS014287_WUGC_scaffold_9867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	17265

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1988365	C1988365__gene_154704	F068811	MDQDGSEHNICSTREGLCPGKKQQGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRIK
SRS014287_WUGC_scaffold_10837	SRS014287_WUGC_scaffold_10837__gene_12874	F047125	MDVALLLMVLGVMLSGFRAADALDHIRREILRQEGKRRGW
SRS014287_WUGC_scaffold_30067	SRS014287_WUGC_scaffold_30067__gene_49732	F090515	GTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
SRS014287_WUGC_scaffold_35445	SRS014287_WUGC_scaffold_35445__gene_65114	F056682	VKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKNYKNQEVL
SRS014287_WUGC_scaffold_9867	SRS014287_WUGC_scaffold_9867__gene_11492	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIVLPIPSHRAKSHDFACWWPATAGHSRSAVALPGKSNS