7000000433: Human stool microbial communities from NIH, USA - visit 1, subject 765640925

Overview

Basic Information

• IMG/M Taxon OID: 7000000433
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052983 | Ga0030537
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 765640925
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 139286433
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F050794	Metagenome	145	N
F064725	Metagenome	128	N
F066905	Metagenome	126	Y
F068941	Metagenome	124	N
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F088921	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2723799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	657
SRS050752_LANL_scaffold_11020	Not Available	9452
SRS050752_LANL_scaffold_12269	Not Available	7330
SRS050752_LANL_scaffold_13855	Not Available	11237
SRS050752_LANL_scaffold_14400	Not Available	5006
SRS050752_LANL_scaffold_21160	Not Available	8020
SRS050752_LANL_scaffold_29523	Not Available	1884
SRS050752_LANL_scaffold_32287	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2249
SRS050752_LANL_scaffold_3261	All Organisms → cellular organisms → Bacteria	74814
SRS050752_LANL_scaffold_34713	Not Available	7617
SRS050752_LANL_scaffold_38937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	528
SRS050752_LANL_scaffold_42286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	688

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2723799	C2723799__gene_187825	F032286	VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIILNDKRRSLLNSALFRAYNRTERKTISLFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQLSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRK
SRS050752_LANL_scaffold_11020	SRS050752_LANL_scaffold_11020__gene_19704	F098313	MREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMNKEASFVNLVKDRDDDGRFAILWNFSSDDDITIKNTCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE
SRS050752_LANL_scaffold_12269	SRS050752_LANL_scaffold_12269__gene_22190	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLI
SRS050752_LANL_scaffold_13855	SRS050752_LANL_scaffold_13855__gene_25174	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVENPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS050752_LANL_scaffold_14400	SRS050752_LANL_scaffold_14400__gene_26187	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWLAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKVD
SRS050752_LANL_scaffold_21160	SRS050752_LANL_scaffold_21160__gene_38881	F075481	MRLRISLRAIFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIKTSDLNADIVITERKFDTDKDVDPATGKRPVSSQTDTHIVIGRRDSAVTADSLGIDKTITGIEDIDKKTDIEHKDVDDKKESRWPIAITSISVLLILLVLIYLLNKMKVL
SRS050752_LANL_scaffold_29523	SRS050752_LANL_scaffold_29523__gene_54997	F050794	MTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI
SRS050752_LANL_scaffold_32287	SRS050752_LANL_scaffold_32287__gene_60640	F078005	MKKSEFVKELEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLEVEADVMAGMDDIDFTCLMSEVYKQKAIKAIMMEKDDDEDN
SRS050752_LANL_scaffold_3261	SRS050752_LANL_scaffold_3261__gene_3870	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGK
SRS050752_LANL_scaffold_34713	SRS050752_LANL_scaffold_34713__gene_65382	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLKGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGHDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE
SRS050752_LANL_scaffold_38937	SRS050752_LANL_scaffold_38937__gene_73976	F088921	LGGCKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRYKMW
SRS050752_LANL_scaffold_42286	SRS050752_LANL_scaffold_42286__gene_81861	F066905	MISYKIKRREKNMPEEGRNCGCNNNGGFLNGLFGGCGCDSEILFFIIIFLLLFTNFGCGCQR