7000000431: Human stool microbial communities from NIH, USA - visit 1, subject 159369152

Overview

Basic Information

• IMG/M Taxon OID: 7000000431
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052981 | Ga0030466
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159369152
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 60990505
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068811	Metagenome	124	N
F071325	Metagenome	122	N
F088921	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS013158_Baylor_scaffold_11693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	658
SRS013158_Baylor_scaffold_14840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1226
SRS013158_Baylor_scaffold_4477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1260

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS013158_Baylor_scaffold_11693	SRS013158_Baylor_scaffold_11693__gene_31312	F071325	YCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
SRS013158_Baylor_scaffold_14840	SRS013158_Baylor_scaffold_14840__gene_41817	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNKNVSETLCIFSIDKTNCCRI
SRS013158_Baylor_scaffold_4477	SRS013158_Baylor_scaffold_4477__gene_10947	F088921	AGKNHFLYSEKSKSIVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKLAMIRDKMRSK