Sample 7000000422

Basic Information
IMG/M Taxon OID	7000000422 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052971 \| Ga0031333
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 823052294
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000422 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052971 | Ga0031333

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 823052294

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	106455055
Sequencing Scaffolds	19
Novel Protein Genes	20
Associated Families	17

Dataset Contents

Total Genome Size

106455055

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F046432	Metagenome	151	Y
F066860	Metagenome	126	N
F076191	Metagenome	118	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092230	Metagenome	107	N
F095629	Metagenome	105	N
F097490	Metagenome	104	N
F099452	Metagenome	103	N
F103430	Metagenome	101	N
F103432	Metagenome	101	N
F103435	Metagenome	101	N
F105378	Metagenome	100	N
F105379	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C3596471	Not Available	551	Open in IMG/M
C3607369	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	597	Open in IMG/M
C3607583	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	598	Open in IMG/M
C3642067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	854	Open in IMG/M
C3652931	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1012	Open in IMG/M
C3680984	All Organisms → cellular organisms → Bacteria	3864	Open in IMG/M
SRS057791_LANL_scaffold_14596	Not Available	56441	Open in IMG/M
SRS057791_LANL_scaffold_15973	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	9811	Open in IMG/M
SRS057791_LANL_scaffold_27052	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	2609	Open in IMG/M
SRS057791_LANL_scaffold_32194	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	941	Open in IMG/M
SRS057791_LANL_scaffold_48792	Not Available	1052	Open in IMG/M
SRS057791_LANL_scaffold_58384	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	9847	Open in IMG/M
SRS057791_LANL_scaffold_60461	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5765	Open in IMG/M
SRS057791_LANL_scaffold_73433	All Organisms → Viruses → Predicted Viral	1675	Open in IMG/M
SRS057791_LANL_scaffold_73843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4538	Open in IMG/M
SRS057791_LANL_scaffold_74824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1332	Open in IMG/M
SRS057791_LANL_scaffold_80225	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	858	Open in IMG/M
SRS057791_LANL_scaffold_81805	All Organisms → cellular organisms → Bacteria	41694	Open in IMG/M
SRS057791_LANL_scaffold_9899	Not Available	851	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3596471	C3596471__gene_169114	F103430	VKQITIKAFIGSNNKTKQLEVDKIISTVNVNHEAFTLDYPVIGYWRSEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI
C3607369	C3607369__gene_172258	F105379	KLLKCDKILYDRNYVNPIIGVGQEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAMPTLKSDHVVATVYKAPNKDFNVLRFKITKRNGIIVNQSMLFLPY
C3607583	C3607583__gene_172332	F105379	KLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDYYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY
C3642067	C3642067__gene_182291	F097490	MELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C3652931	C3652931__gene_185446	F046432	MWEMTENELSEIISKYQLPEGRYLVVEEGSFGESEFFWVIKNESTNKKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRRIETLELASDAEDEISKYLFGMYSIF
C3680984	C3680984__gene_194397	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGVGGWVLALLGPWALIVSCICLAIISRQMKKRHVSKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDKE
SRS057791_LANL_scaffold_14596	SRS057791_LANL_scaffold_14596__gene_17903	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDDTLISPIFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR
SRS057791_LANL_scaffold_15973	SRS057791_LANL_scaffold_15973__gene_19663	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLNDLREAPWYEKWFTYDQENSRLIDLSRFNFRSLKRFEKVEYLKDAEHYDFERVIEVESYSLYDTLAEDDDATLFGFTAENILLNHGFFNNTDYNLYDVPEEFMSDQEVCMYMCLLNKDNIDFIDKNKYEDTILYNIVKDRLFSSVYWSIRDSIEEDTRTRAR
SRS057791_LANL_scaffold_27052	SRS057791_LANL_scaffold_27052__gene_34286	F095629	MEVKTMRELIICACLLGCFGVANAAAPVEQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLAEKGR
SRS057791_LANL_scaffold_32194	SRS057791_LANL_scaffold_32194__gene_41500	F089057	YLEANMTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIESESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVVSQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAITKDEVLVKDLMNESAMTAFKYMSDEDIHDVVDDINSRSVLARYLSRM
SRS057791_LANL_scaffold_48792	SRS057791_LANL_scaffold_48792__gene_65783	F080164	MVGLALCAAPQVTLRERASAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYESHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDSL
SRS057791_LANL_scaffold_58384	SRS057791_LANL_scaffold_58384__gene_80204	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNIFNLYKDIINLDDVLLLTELRQTEWYRDWFTNDKRNSDLIDLSRFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR
SRS057791_LANL_scaffold_60461	SRS057791_LANL_scaffold_60461__gene_83654	F092229	MNKEYRFDHIPEVVLRNVKFIRENNIDIGTGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFHTTIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYSTIKEFKYLPLMNVLTQLTRSNPSGYVLNHKLELVKG
SRS057791_LANL_scaffold_73433	SRS057791_LANL_scaffold_73433__gene_104268	F095629	MRELIICVCLLGCFGVAHAAAPVEQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLAEKEGK
SRS057791_LANL_scaffold_73843	SRS057791_LANL_scaffold_73843__gene_104923	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKCLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEVLREFDKLVIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLKMADSARIRQMVNSIELDVYEVNS
SRS057791_LANL_scaffold_74824	SRS057791_LANL_scaffold_74824__gene_106545	F092230	YAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSAEVSDSSSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV
SRS057791_LANL_scaffold_76618	SRS057791_LANL_scaffold_76618__gene_109714	F103435	MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYQYLIDSPDFETIFSEVLFNQSEVEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQVWYPFDMNTYTNALE
SRS057791_LANL_scaffold_80225	SRS057791_LANL_scaffold_80225__gene_116368	F040149	VADEGAEELRGEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLAPVWSHNSEDAIHDFIYDISVPKGHTLTAVRERETVVAQLLNIH
SRS057791_LANL_scaffold_81805	SRS057791_LANL_scaffold_81805__gene_119613	F076191	MSMKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA
SRS057791_LANL_scaffold_9899	SRS057791_LANL_scaffold_9899__gene_12086	F103432	MKLIHSLFSLPLLFVLGGLFCTTACQDDVEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDGKTIFRRHTLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGMAPRLFGVKELSVVGIDRKGKPRDLGNYSCPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLLKTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000422: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 823052294

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences