7000000421: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 686765762

Overview

Basic Information

• IMG/M Taxon OID: 7000000421
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052970 | Ga0031342
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 686765762
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73484239
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F040149	Metagenome	162	N
F043990	Metagenome	155	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F051212	Metagenome	144	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F066860	Metagenome	126	N
F067847	Metagenome	125	N
F080164	Metagenome	115	N
F090516	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4030634	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	519
C4033494	All Organisms → cellular organisms → Bacteria	531
C4035950	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	543
C4039534	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	562
C4052390	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	644
C4060496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	711
C4061164	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	718
C4069542	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	815
C4089861	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1343
C4095387	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1718
C4102757	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3183
SRS043663_LANL_scaffold_21540	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	6972
SRS043663_LANL_scaffold_40385	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	5137

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4030634	C4030634__gene_92686	F051212	FMKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQANKTWDYITKQIIDIKYSQLNNHLNLEK
C4033494	C4033494__gene_93810	F061925	LTKEKKKTGKSKQTNIRNNPMSWEYSINLDSEESVSSVVTDLKICELFSSSTMDYIDWKNPKSINSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C4035950	C4035950__gene_94753	F066860	KKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE
C4039534	C4039534__gene_96159	F043990	NHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNIANGYYKYVVDENDDRDFGILIVDTTRKEICIYNQIF
C4052390	C4052390__gene_101221	F027205	KGPRGLPLIERTHVASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
C4060496	C4060496__gene_104487	F067847	MFSHIVRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELNNL
C4061164	C4061164__gene_104766	F018385	MADLINSWLPYQELSIEKDRDPVTDDEIIYGNNVKHFTLTVYSPEGRVNKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFTHDGMNE
C4069542	C4069542__gene_108230	F058221	MRNKMGKIKNFQDLKNQKEELKAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
C4089861	C4089861__gene_117214	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
C4095387	C4095387__gene_119961	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTIEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLRALEEYTPDEYEGVSAAMAEMMEYSYKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
C4102757	C4102757__gene_124214	F046432	MWEMTESKLSEIISKYQLPMDDYSVEIDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDAEDEIPKYLFGMYSIFEMKS
SRS043663_LANL_scaffold_21540	SRS043663_LANL_scaffold_21540__gene_25583	F080164	MVGLALCAAPQVTLRERASAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS
SRS043663_LANL_scaffold_40385	SRS043663_LANL_scaffold_40385__gene_53540	F040149	VADEGDEELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLTPVWSHDSEDAIDYFIYDVLVPEGHALTAVGERETVVAQLLNIHRYVYYP