7000000420: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159551223

Overview

Basic Information

• IMG/M Taxon OID: 7000000420
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052969 | Ga0027999
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159551223
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19073474
• Sequencing Scaffolds: 2
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F067847	Metagenome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1547532	All Organisms → Viruses → Predicted Viral	2362
SRS024347_LANL_scaffold_4354	All Organisms → Viruses → Predicted Viral	2640

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1545096	C1545096__gene_34949	F067847	EMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVKEDGKFAEVEEKIKEAELNSL
C1547532	C1547532__gene_37347	F018385	MADLINSWLPYQELSIEKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVSKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFTHDGMNELVFMPDARRRTVSQLSFDN
SRS024347_LANL_scaffold_4354	SRS024347_LANL_scaffold_4354__gene_3197	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYELRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIR
SRS024347_LANL_scaffold_4354	SRS024347_LANL_scaffold_4354__gene_3198	F027205	VASRLIVSADDILKAVKESEEFERKALNEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
SRS024347_LANL_scaffold_4354	SRS024347_LANL_scaffold_4354__gene_3201	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA