7000000416: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319

Overview

Basic Information

• IMG/M Taxon OID: 7000000416
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052965 | Ga0031005
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 93523753
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F043991	Metagenome	155	N
F051212	Metagenome	144	N
F054109	Metagenome	140	N
F057446	Metagenome	136	N
F061926	Metagenome	131	N
F063778	Metagenome	129	Y
F066860	Metagenome	126	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F095630	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2239416	Not Available	1122
SRS011343_Baylor_scaffold_14704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3838
SRS011343_Baylor_scaffold_28902	Not Available	910
SRS011343_Baylor_scaffold_38303	Not Available	1608
SRS011343_Baylor_scaffold_43776	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1506
SRS011343_Baylor_scaffold_45051	All Organisms → Viruses → Predicted Viral	1635
SRS011343_Baylor_scaffold_51376	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	921
SRS011343_Baylor_scaffold_52321	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2170
SRS011343_Baylor_scaffold_62918	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2836
SRS011343_Baylor_scaffold_64166	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	718
SRS011343_Baylor_scaffold_70636	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	4593

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2239416	C2239416__gene_162951	F054109	MVGRPKSKKGVKVHTAFKIYPVDKARVQAMADKLDMSLSAYINKAVLEKVERDEKSEN
SRS011343_Baylor_scaffold_14704	SRS011343_Baylor_scaffold_14704__gene_15674	F063778	MPETISEGAQQQLLQQLQDALGLVKKADTCALDVAAITHSAADGHQLTEVMLQELTTAREYLKSCVDQIEHAISNVKAIPLDPPPED
SRS011343_Baylor_scaffold_28902	SRS011343_Baylor_scaffold_28902__gene_33309	F070224	MKRLLFLLLTLLHCTAWGQVYNTPDSIYVVSSGVYIPPVSGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSEDNNFMVVGSGDSLVIENFFAYYAAGFPEMKEYELYYKGAGEEITKEDFDSIKFTRMPTALREIKKYKLPRARRTTGEVDRWQHP
SRS011343_Baylor_scaffold_38303	SRS011343_Baylor_scaffold_38303__gene_45748	F022002	MSRRLALTLGLLLALLFSLPSHAQDGRSKMPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFAFGDLEILEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS011343_Baylor_scaffold_43776	SRS011343_Baylor_scaffold_43776__gene_53307	F051212	HSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKFSQLYNHLNLEK
SRS011343_Baylor_scaffold_45051	SRS011343_Baylor_scaffold_45051__gene_55102	F043991	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLDNGTEVSFYKGRNLIYADILFSKGIRTILFKCRQKKNLTRFISRVLELAQGEPSNIHPDFRA
SRS011343_Baylor_scaffold_51376	SRS011343_Baylor_scaffold_51376__gene_64387	F061926	VLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS011343_Baylor_scaffold_52321	SRS011343_Baylor_scaffold_52321__gene_65788	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
SRS011343_Baylor_scaffold_62918	SRS011343_Baylor_scaffold_62918__gene_83082	F095630	MIYSSLYKTVENNGLLAHIYEHLLAQYVMKALQRRGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGDAALRVAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRVPYIKYSRKSKSLFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCNNLQAALVRCSHNYEQVLLGRDTLNSILGGCVVGGRGWLEMADNTLIGQILKAIEIDVYDI
SRS011343_Baylor_scaffold_64166	SRS011343_Baylor_scaffold_64166__gene_85411	F057446	SYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVPYFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS011343_Baylor_scaffold_70636	SRS011343_Baylor_scaffold_70636__gene_100790	F077403	MCAVYAEERISVHFEVRWHRERNPMDTLRRGLDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM