7000000408: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765640925

Overview

Basic Information

• IMG/M Taxon OID: 7000000408
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052956 | Ga0031293
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765640925
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73019840
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → Viruses → Predicted Viral	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046433	Metagenome	151	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N
F105378	Metagenome	100	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2580747	Not Available	668
C2584327	Not Available	696
C2595782	Not Available	811
C2597705	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	836
C2599231	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	859
C2599257	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	859
C2614958	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1221
C2619656	All Organisms → Viruses → Predicted Viral	1449
C2619658	All Organisms → Viruses → Predicted Viral	1449
C2624192	All Organisms → Viruses → Predicted Viral	1852
C2625364	Not Available	2026
C2626364	Not Available	2228
SRS056323_LANL_scaffold_45604	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	794
SRS056323_LANL_scaffold_48140	Not Available	821
SRS056323_LANL_scaffold_48266	All Organisms → Viruses → Predicted Viral	1870
SRS056323_LANL_scaffold_48482	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1210

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2580747	C2580747__gene_109419	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKDLMNESATMAFQYMSEEDIHDAVDDINSRSVLAR
C2584327	C2584327__gene_111033	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPVPMQDHLENNQIGYDSTNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYPLGSVNE
C2595782	C2595782__gene_116376	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERPNRELILSSMNVFNLYKDIINLDDVSLLAELRHTEWYKDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR
C2597705	C2597705__gene_117356	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIAMVKMLLFVPGLNQSVVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNIILFLALLEEQAFRSGSEKWNWRERVRASVCFGLLHIMNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
C2599231	C2599231__gene_118124	F095629	MTFKERMMRELIICLCLLGCFGVANANNVEQPKEVKIVHNDNNVALHKKIYQLEKRIERLEELLKKEGK
C2599257	C2599257__gene_118139	F099453	MLRRKDMNRFDIIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVELHGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRNEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNEVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYIDRLKTHYAFMVCENRSYINSVNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQG
C2602883	C2602883__gene_119946	F103435	VIRMKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYQYLIDSPEFETIFSEVLFNQSEAEFYEFYKAIDRFYNGSEVFIIIGNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE
C2612505	C2612505__gene_125077	F103435	VIRMKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRNYGIHPQIIYDIDDVLSIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE
C2614958	C2614958__gene_126463	F095629	MRELIICACLFGCFGVANAAAPVDQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLAEKEGK
C2619656	C2619656__gene_129304	F092232	TQAKFIAEYNDKNRPKFNDKFFNKSDDDIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTASSAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLDKFNFEDVIKISDHDLNDPEYYTFAIANAHMKTPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYG
C2619658	C2619658__gene_129305	F092232	TQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQTLLIGDETPSISIKDSDLKILKVTYHVACAKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKILRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANSHMKSPFYISAVKTFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYG
C2624192	C2624192__gene_132293	F080166	MEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTVIDEAIDICDPGNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLIPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMR
C2624192	C2624192__gene_132294	F081455	METTNTENKNLFQQLARLGFDVNESLLELEKEYAPVEEIDMQNVDIIDAAEEAIQQPLANTDSSIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILSNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK
C2625364	C2625364__gene_133199	F092229	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPVVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSPKVLDLAIEYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVREIFVKYGLKPNASRNLYNRINDNLNLFYYIEDYLEEYKEEGRFIYGTKEYKIIKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG
C2626364	C2626364__gene_133906	F092229	MNDYRFDHIPEVVLRNIRFIRENNIDIGTGDDVLECMMDINPIIRTKIYDDYEFAKDVAERRFGSTIGGLDMITLLQKCNTRPYNSILNNIYFRYFNSKLIDDLFELAQSPKILDLAIEYECEYYAINTAKTSIRRYNSDAYYNKFAADSNIVSSTRVLNNPQVNAVKSAEFTHELLMASRAEKFSPENVREIFIKYGLKPNPSRNLYNRINDNLNLFYYIEDYLDEYREEGKFIYGGKEYKGFKDIRSLPLMVVLIQLTRENASGYILNSKLELVKG
SRS056323_LANL_scaffold_45604	SRS056323_LANL_scaffold_45604__gene_44617	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGASRISVGGYMIDIPKSAMPTLKSDHVVATVYKAPNKDFNVLRFKITKRNGIIVNQSMLFLPY
SRS056323_LANL_scaffold_48140	SRS056323_LANL_scaffold_48140__gene_49012	F081455	VLFKAKEKHIMETTNIQEINMKAAEKLGELFDYVFCGKKPNTEEKDIPPVEEIGAEKVDIIDVAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKDLVIRLSTVINGTTKYYADIYPDLNKIDLDHHLISSAKK
SRS056323_LANL_scaffold_48266	SRS056323_LANL_scaffold_48266__gene_49331	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSDDTYSNIFRTSIVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAIFDKVLGMVVGQIKHTASSKEGRALGIFMTICILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRTVLSRYLNKM
SRS056323_LANL_scaffold_48482	SRS056323_LANL_scaffold_48482__gene_49935	F046433	MIELPTSPNALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIKMTECYLPDYMENCAKELIDELAFLGVPELNFAANALAKRLRHHLEVGNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVRERISVFEVDNDPEDHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEAYYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGKNFDGLSRFRQLLEKE