7000000389: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160319967

Overview

Basic Information

• IMG/M Taxon OID: 7000000389
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052934 | Ga0031269
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160319967
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 80181244
• Sequencing Scaffolds: 22
• Novel Protein Genes: 23
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F057446	Metagenome	136	N
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F076191	Metagenome	118	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F095630	Metagenome	105	N
F097490	Metagenome	104	N
F099452	Metagenome	103	N
F099454	Metagenome	103	N
F103430	Metagenome	101	N
F103435	Metagenome	101	N
F103436	Metagenome	101	Y
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3758765	Not Available	504
C3771915	Not Available	558
C3773245	Not Available	565
C3786657	All Organisms → cellular organisms → Bacteria	647
C3789059	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	665
C3789769	Not Available	671
C3794671	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	719
C3803127	Not Available	822
C3809365	All Organisms → cellular organisms → Bacteria	935
C3810701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	967
C3814417	All Organisms → Viruses → Predicted Viral	1074
C3814997	Not Available	1094
C3820241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1328
C3820805	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1362
C3823245	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1540
C3831621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3958
SRS017439_Baylor_scaffold_23897	Not Available	33010
SRS017439_Baylor_scaffold_36379	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	900
SRS017439_Baylor_scaffold_45204	Not Available	592
SRS017439_Baylor_scaffold_51568	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	616
SRS017439_Baylor_scaffold_52796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4462
SRS017439_Baylor_scaffold_6123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	3576

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3758765	C3758765__gene_112141	F068942	THSKQPKPIFQIQSSVLIDNPHTKSIMIRKILSLPTLALCFTLGSAFFAGCNEEEYIKDTKVRWSNVKNPQYGNAINITLKAEGETFTTVGDHSWISFRRYASSLDTFTSHDFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTY
C3771915	C3771915__gene_117798	F103430	TMKLITIKAFIGSNNETKELEIDKIASTLSKNHEAFTLQYPVFGYWKGETEQTAILYLSDERSKVMNTLNELKEVLDQEAIAYQIQDKLNLI
C3773245	C3773245__gene_118374	F103430	MELITIKAFIGSDNKTKTLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLSELKEVLDQEAIAYQIENDLQLI
C3786657	C3786657__gene_124381	F071328	VELCKHLVLERTIDSKEPLTTAIYLRYSSQLLLKKKRAIRRLGIEKENISAILRQCGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKESRPFILKVLPVKRSEW
C3789059	C3789059__gene_125491	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAYFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C3789769	C3789769__gene_125818	F071328	IVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLPLKKRRAIRRLGIEKKYVSAILRQYGIHYIEYGDNEHRVFFLDRGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSE
C3794671	C3794671__gene_128116	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGIGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLELSGDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIITRTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDF
C3803127	C3803127__gene_132178	F081455	EYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEHILGSYVDYDSFNKIKESNADTIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLRYELIRHQGREKDIVVRLSTVVNDVKYYADIYADLNKIDLDHHLISSAKKK
C3809365	C3809365__gene_135313	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENNHHYKKPMICVRSAHDNRELKDVIHLLILAGGNEIPSSHYGVLRDA
C3810701	C3810701__gene_135992	F097490	MNVFCKIILPLLCIISCSKRDEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYDNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C3814417	C3814417__gene_137933	F089057	MTNIIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGVFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNASAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM
C3814997	C3814997__gene_138264	F099452	MDKTYEELLQETLSKIYELKDLDNRDRGKALTIFIGERLNRELLLSSRHIFTLYSDIINLDDVSLLTDLRKTDWYKDWFTDDSNNANLIDLSRFNFKTLARFEKEEYLRNVEQYDFEGVTQVDGYSLFDTLIEDKDIELFKLAAENILISHGFFDNTDYNFYDVPDEYMGDKEVCAYMCLLNIENMDFVDKKTLDTTVLYNIVKDRICGSIYFTLFDSLNKDTRTNAR
C3820241	C3820241__gene_141225	F076191	MKIIAESPAEEALLWRIKALSDELVNQDNRCTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDAGN
C3820805	C3820805__gene_141540	F095630	MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEVQDAYNEALRLFDKWNIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIRKKHTVYDRGDQWSEASKSVGYRTFLGISKKDGSIVHQLKNEFMEYVQFLSASPFCGNLQVALVRCSHNYEQVLLGRDTLNSILGGCVVGGRGWLEMADDTRIRKMIDLIEIDIYEIDY
C3823245	C3823245__gene_143055	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
C3824561	C3824561__gene_143887	F103435	MKFVFCTEPIYQYYRAHLYDADKDKLDKQLLIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFEDIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALEGKSTVEPLRVWYPFDMNSYTNALE
C3831621	C3831621__gene_149118	F103436	FLLLIILQVVAMMATSKYGWCCKSDAEILENLKDWVSKCDVSSKREALKKIDSAFALWGAGEYVSAVHLLDENEVFLEKSDWPYYALGIEILKARKHEFFNE
SRS017439_Baylor_scaffold_23897	SRS017439_Baylor_scaffold_23897__gene_22737	F054109	MVGRPKSKKGTKVHTAFKIYPADKERAQNMADKLGMSLSAYINKAVLEKVERDEKSED
SRS017439_Baylor_scaffold_36379	SRS017439_Baylor_scaffold_36379__gene_35989	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSIEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHNGSYWEYRY
SRS017439_Baylor_scaffold_45204	SRS017439_Baylor_scaffold_45204__gene_45912	F099454	THKPKTHSGIKTLMKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQQKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK
SRS017439_Baylor_scaffold_51568	SRS017439_Baylor_scaffold_51568__gene_55856	F051213	VVMALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
SRS017439_Baylor_scaffold_52796	SRS017439_Baylor_scaffold_52796__gene_59492	F103436	MSKGGWRDKTDSEIFDSLRDWVMKCDLKYSKSDALYKVKLAQCLWGDAKYFEAVHLLDENEVFFEKSDWPYYALGIEILKARKHWLFSIFSTE
SRS017439_Baylor_scaffold_6123	SRS017439_Baylor_scaffold_6123__gene_5669	F053092	MQSDQGLILCLTHTLLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIVSSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK