Sample 7000000386

Basic Information
IMG/M Taxon OID	7000000386 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052931 \| Ga0031278
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765135172
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000386 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052931 | Ga0031278

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765135172

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	89753140
Sequencing Scaffolds	19
Novel Protein Genes	21
Associated Families	20

Dataset Contents

Total Genome Size

89753140

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	3

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F036281	Metagenome	170	N
F046432	Metagenome	151	Y
F054110	Metagenome	140	N
F067846	Metagenome	125	Y
F072446	Metagenome	121	N
F076191	Metagenome	118	N
F078842	Metagenome	116	N
F081455	Metagenome	114	N
F084362	Metagenome	112	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099453	Metagenome	103	N
F103431	Metagenome	101	N
F103435	Metagenome	101	N
F103436	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
C2245678	Not Available	592	Open in IMG/M
C2284115	Not Available	990	Open in IMG/M
C2299793	All Organisms → Viruses → Predicted Viral	1469	Open in IMG/M
C2300863	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1521	Open in IMG/M
C2301687	Not Available	1574	Open in IMG/M
C2306861	Not Available	1989	Open in IMG/M
C2309189	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	2301	Open in IMG/M
C2309245	All Organisms → cellular organisms → Bacteria	2309	Open in IMG/M
C2313345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	3368	Open in IMG/M
C2315115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4424	Open in IMG/M
SRS018791_WUGC_scaffold_24999	All Organisms → Viruses → Predicted Viral	4114	Open in IMG/M
SRS018791_WUGC_scaffold_35548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1273	Open in IMG/M
SRS018791_WUGC_scaffold_39542	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	6389	Open in IMG/M
SRS018791_WUGC_scaffold_44403	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5518	Open in IMG/M
SRS018791_WUGC_scaffold_5064	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	19400	Open in IMG/M
SRS018791_WUGC_scaffold_50995	All Organisms → Viruses → Predicted Viral	4132	Open in IMG/M
SRS018791_WUGC_scaffold_52867	Not Available	717	Open in IMG/M
SRS018791_WUGC_scaffold_53743	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
SRS018791_WUGC_scaffold_7994	All Organisms → Viruses → Predicted Viral	1518	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2245678	C2245678__gene_118870	F032313	FLILIFALTLMACDNNTPQEKPREQEKHEVPVSKPKPQFDEVGERIWYGQTPAMRLDSTNYGAGLTSVFGMRTSSISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLDTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEV
C2284115	C2284115__gene_132794	F084362	MNCTFTVRWSDEKNKPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDNPSESAAEQKGFWWQE
C2299793	C2299793__gene_139700	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
C2300863	C2300863__gene_140192	F033081	MPRDTRPIFVWPKLVVAIEGYFHRRWLVAIAVLLIAVTIVIAKALLLVPGLDNSVVGLLTSIFETFLPARWATGAAWVAGMTGVFLIGDFTDYTPSQKSLHSLRATKWGVYNALLLFALWEEQAFRSGSEKWSWRERVRASVCFGAIHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRNQIVATGAAATVHTLYNVIVLSLTVAAAAVYLAIDIA
C2301687	C2301687__gene_140565	F085820	MRSTFYLFAMLFVATTFFSCETGEPAPRATWGEIVNPIEAFMYPRDLKVFAGDNDGRRWLILVIPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKGIRVLRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSEKGKK
C2306861	C2306861__gene_143171	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENDHHYKKPMICVRSAHDNRELKDVIHLLILAGGNEIPNNHYGFLRDAGY
C2309189	C2309189__gene_144420	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVEHHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRQKRELEAISRQLNALTLTSIGTSPVLCGVKSIEAVGVAERGNTYDLSREMKLRIRDYFGRVKYRSSGIVTLNCENTESMTAKYVVPLARIREDELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPNKSVLENYQQYGFEREATYFTTLWPLPDYKYNEREW
C2309245	C2309245__gene_144456	F046432	MWEMTESKLSNIISKYQLPMDNYLVEIDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKP
C2313345	C2313345__gene_146959	F067846	MESLQAQWERKTFNDYDRRCCAEDAYNEAIEREIECIEDDISNGDSDAICAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQIEEDYRKGYILND
C2315115	C2315115__gene_148331	F103436	MITTSKGGWRYKSDFEIFDSLRDWVMKCDVKYVKRDALDKIDYARSLWCRAEYVAAVHLLDENEVFLKKSDWPYYALGIQILRARKHEFFNE
SRS018791_WUGC_scaffold_24999	SRS018791_WUGC_scaffold_24999__gene_32284	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSNDEYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAIFDKVLGMVVGQIKHTASSKEGRALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAIDAFQYMSEEDIHIVVDDINSRTVLSRYLNKI
SRS018791_WUGC_scaffold_35548	SRS018791_WUGC_scaffold_35548__gene_46633	F103431	MIDLDALVVGMLFFIQLFLQGIAWRVAITHFLHAERGNAAAAAFNGAFGEDIADCHAEDDDDKDAESQKEGFHV
SRS018791_WUGC_scaffold_37921	SRS018791_WUGC_scaffold_37921__gene_49977	F103435	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDILNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE
SRS018791_WUGC_scaffold_39542	SRS018791_WUGC_scaffold_39542__gene_52275	F092232	MNTQAKFIAEYNDKNRPKFNDKFFNKSDDDIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTASSAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLDKFNFEDVIKISDHDLNDPEYYTFAIANAHMKTPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDENFSKMLNIYREEKGYTSAIMLADDAGLELTDARDPVAVAFDADLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV
SRS018791_WUGC_scaffold_44403	SRS018791_WUGC_scaffold_44403__gene_58972	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGSNGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARKNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMTNNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
SRS018791_WUGC_scaffold_5064	SRS018791_WUGC_scaffold_5064__gene_6338	F099453	MLRRKDMNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEVELKCVKQSCQWILDNMQYIRSLGLVVIPEVYQARLANLGNIIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGV
SRS018791_WUGC_scaffold_5064	SRS018791_WUGC_scaffold_5064__gene_6342	F081455	METMKNLLEMENVECISNLISKCSDYINRKEKNTNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSTFNPEGDLNKRLRYELIRHQGREKDLVIRLSTVLNGTTKYYADIYPDLNKIDLDHHLISSAKK
SRS018791_WUGC_scaffold_50995	SRS018791_WUGC_scaffold_50995__gene_70401	F095629	MTFKERMMRELIICVCLLGCFGVANANNVEQPKEVKIVHNDDSVILHKKIYQLEKRIERLEELLKKEDK
SRS018791_WUGC_scaffold_52867	SRS018791_WUGC_scaffold_52867__gene_74800	F032313	FLILIFALMLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGRTPAIRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK
SRS018791_WUGC_scaffold_53743	SRS018791_WUGC_scaffold_53743__gene_77511	F078842	MIISSIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKTTYDKVLREFDKLVIPEDDILRAASECGIEMNRNIAEVDRSELSKKLHEVQISPWRKQIDMVYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLSYDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSMLNAILGGCVIGGKGWLEMADSARIRQMINSIELDIYEVNS
SRS018791_WUGC_scaffold_7994	SRS018791_WUGC_scaffold_7994__gene_10223	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPEKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000386: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765135172

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences