7000000380: Human stool microbial communities from NIH, USA - visit 1, subject 764487809

Overview

Basic Information

• IMG/M Taxon OID: 7000000380
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052925 | Ga0030491
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764487809
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 186529295
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F051210	Metagenome / Metatranscriptome	144	Y
F055775	Metagenome	138	N
F067845	Metagenome	125	N
F088914	Metagenome	109	N
F089054	Metagenome	109	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3013446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	734
C3133072	Not Available	42544
SRS015663_WUGC_scaffold_15196	Not Available	41112
SRS015663_WUGC_scaffold_3388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7918
SRS015663_WUGC_scaffold_34609	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1959
SRS015663_WUGC_scaffold_37564	All Organisms → Viruses → Predicted Viral	1649
SRS015663_WUGC_scaffold_6431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3357

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3013446	C3013446__gene_210678	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPDDVTVALLLDDSAAMTARLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
C3133072	C3133072__gene_275555	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVKKEVEKKISHARVVSWLVDTTGDSPKYTIHIINANSGAVAAIALN
SRS015663_WUGC_scaffold_15196	SRS015663_WUGC_scaffold_15196__gene_33383	F051210	MNTQYLQMMQTPSMMEALINSSVSAEDANLRSREYAKMFSRNDEMKDLFGLGNAGNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDIQAMGNFTLNITPTTNADYSSLIGRKIIPGTVRVKIATATEKFELIDNGQGAFMAVAGKISNGTINYLNGRVEFTLATALAGDAATETITIVGKEDVTGTPCNTIGASNAHANDKRFIAKMQQLGLATVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKVINYKLVSTLEEGYNGNVMADLDLTQGAMTGQFMDYRSRVDLFDAYLINVESALATKAVKGVDVTTYVAGNMASNQFQKGGMIGKWERNTKMTYINDLLGWYNGIPVLRSTDIAEAPGEGTFYAIHKTKDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYMAPELVQKVTFKFGI
SRS015663_WUGC_scaffold_3388	SRS015663_WUGC_scaffold_3388__gene_6411	F013656	MGKIYKEPNKSEMETTINVLYSENILSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDEKTKIQKIILKANIYEL
SRS015663_WUGC_scaffold_34609	SRS015663_WUGC_scaffold_34609__gene_77580	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRLVLLVALCIWMVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
SRS015663_WUGC_scaffold_37564	SRS015663_WUGC_scaffold_37564__gene_85328	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELRSYLRYPNQEINNNHLHSQYIRLQIREILQIPLRDITIIDIIPLP
SRS015663_WUGC_scaffold_6431	SRS015663_WUGC_scaffold_6431__gene_13370	F088914	VGRILPVCSGFFVFWNRKEGANYQISVKSFSNLDSYDIIQLYIVTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK