7000000374: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159632143

Overview

Basic Information

• IMG/M Taxon OID: 7000000374
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052918 | Ga0031261
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159632143
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 84348203
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F046433	Metagenome	151	N
F054109	Metagenome	140	N
F066860	Metagenome	126	N
F072446	Metagenome	121	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089055	Metagenome	109	Y
F092229	Metagenome	107	N
F099452	Metagenome	103	N
F099454	Metagenome	103	N
F103431	Metagenome	101	N
F105379	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2905404	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	2566
C2906178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2906
SRS016342_Baylor_scaffold_11492	Not Available	49198
SRS016342_Baylor_scaffold_38677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	3877
SRS016342_Baylor_scaffold_42964	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	591
SRS016342_Baylor_scaffold_43553	Not Available	1232
SRS016342_Baylor_scaffold_45535	Not Available	1515
SRS016342_Baylor_scaffold_50237	Not Available	744
SRS016342_Baylor_scaffold_53035	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	820
SRS016342_Baylor_scaffold_59001	All Organisms → Viruses → Predicted Viral	1313
SRS016342_Baylor_scaffold_61815	All Organisms → cellular organisms → Bacteria → Terrabacteria group	957
SRS016342_Baylor_scaffold_62714	All Organisms → cellular organisms → Bacteria	1858
SRS016342_Baylor_scaffold_63768	All Organisms → Viruses → Predicted Viral	2138
SRS016342_Baylor_scaffold_72859	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	3366
SRS016342_Baylor_scaffold_73844	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	6483

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2905404	C2905404__gene_158134	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVEHHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRQKRELEAISRQLNALTLTSIGTSPVLCGVKSIEAVGVAERGNTYDLSREMKLRIRDYFGRVKYSSSGIVTLNCENTESMTAKYVVPLARIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPNKSVLENYQQYGFEREATYFTTLWPLPDYK
C2906178	C2906178__gene_158461	F099454	MKASKLLWAVIMALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGILDSKSDTYLTKKVDTLSNGDFRISYDWVSFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKIIQQAK
C2906178	C2906178__gene_158462	F099454	MRISKILWAVVTALTFVLTSCDRVTDEPTIEGKVNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK
SRS016342_Baylor_scaffold_11492	SRS016342_Baylor_scaffold_11492__gene_12622	F054109	MVGRPKSKKGTKVHTAFKIYPTDKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN
SRS016342_Baylor_scaffold_38677	SRS016342_Baylor_scaffold_38677__gene_44673	F103431	MIDFDALVVGMLFFIQLFLQGIAWRVAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDDDKDAESQKEGFHVCIPEG
SRS016342_Baylor_scaffold_42964	SRS016342_Baylor_scaffold_42964__gene_50167	F089055	CFKPSYSSQYKRTFWHLKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAIDIKMDFADNEAVDLCNQTLGSYGKSLDYINNNPLKTVQAIGSSLQLFREDKTKESCK
SRS016342_Baylor_scaffold_43553	SRS016342_Baylor_scaffold_43553__gene_50952	F032313	MYRFLILIFALMLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK
SRS016342_Baylor_scaffold_45535	SRS016342_Baylor_scaffold_45535__gene_53508	F099452	MDKTYAELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLNDLRKTSWYKKWFTYDQENSRLIDLSKFNFRSLERFEKVEYLKDVEHYDFEGVIEVDSYSLYDILAEENGLNLFCFAAENILLNHGFFNNTDYQLYDVPEEYIDDQEVCMYMCLLNKDNIDFIDKDTYEDTVLWDIVKDRLFGYVYWSIRDSIEEDTRTRAR
SRS016342_Baylor_scaffold_50237	SRS016342_Baylor_scaffold_50237__gene_59657	F081455	KSKKDIPPVEEIGAETVDIIDAAEEAIQQPLQNTDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSTFNPEGDPNKRLRYELIRHQGREKDLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK
SRS016342_Baylor_scaffold_53035	SRS016342_Baylor_scaffold_53035__gene_63431	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE
SRS016342_Baylor_scaffold_59001	SRS016342_Baylor_scaffold_59001__gene_71567	F080166	FKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEEAINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLR
SRS016342_Baylor_scaffold_61815	SRS016342_Baylor_scaffold_61815__gene_75486	F054109	KTMAGRPKTKRGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVARDEKSED
SRS016342_Baylor_scaffold_62714	SRS016342_Baylor_scaffold_62714__gene_76826	F046433	MIELPASPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPLFMKSRYKTTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKVLFLDDWIISGDQVKKRIAGFAVDNDPESHEASVLVMAASSEYIDNGIVADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGENFDGLSRFRQLLERE
SRS016342_Baylor_scaffold_63768	SRS016342_Baylor_scaffold_63768__gene_78357	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLDKITQLQPAADNPEIAIHRPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY
SRS016342_Baylor_scaffold_72859	SRS016342_Baylor_scaffold_72859__gene_94406	F092229	MNEEYRFKHIPEVILRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFHTTIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYHTIKEFKYLPLMNVLTQLTRSNPSGYVLNHKLELVKG
SRS016342_Baylor_scaffold_73844	SRS016342_Baylor_scaffold_73844__gene_97588	F105380	MPILELDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAITRASQFVNKFVSARGNSDLDFVGSALRNKVPSHNIKKCAVFLGKITKEQENVNTYEEFMEWTKNTKWFK