7000000366: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763901136 replicate 2

Overview

Basic Information

• IMG/M Taxon OID: 7000000366
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052910 | Ga0031356
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763901136 replicate 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105500695
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F077404	Metagenome	117	N
F089055	Metagenome	109	Y
F099453	Metagenome	103	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2483080	Not Available	570
C2533448	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1020
C2533654	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1024
C2536580	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1080
C2547120	All Organisms → Viruses → Predicted Viral	1385
SRS065278_LANL_scaffold_31647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1564
SRS065278_LANL_scaffold_38430	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	792
SRS065278_LANL_scaffold_4651	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	6298
SRS065278_LANL_scaffold_64915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1822

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2483080	C2483080__gene_142468	F053092	PITAPRHDEAITLVKEWRPFTDQLMQSAQGLILCLTHALLVLRALVLEPAEMEDTMDDHAVQLFGVLGAKELSITTHRIKTDEHVPRDHIPITLVEGDDIGIVVMIEKVLIGLQDALITTELVAELTDTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
C2497149	C2497149__gene_147226	F055792	VEIAGEALDSTSAVTHRILLLTTQLGESLLASLGAENGVIAEAMVSGALERDLAIDCALEEVRPVLIDKGDDGTEAGTTWGRYPLETLQKESNILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIEPVALPDVTRLDESISL
C2533448	C2533448__gene_160248	F099453	MLRRKDMNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQTRLANLTNVVYTPKYPMAIAMGKLEYMLGKKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA
C2533654	C2533654__gene_160340	F030786	VTGSLQLLLKNGSAAKGGSATGTKKISLADITGGDDSEIGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2536580	C2536580__gene_161466	F051214	KGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
C2547120	C2547120__gene_165753	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRSYVNPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDYYNELMAGSASSGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY
SRS065278_LANL_scaffold_31647	SRS065278_LANL_scaffold_31647__gene_38321	F089055	LKVEKMNSTPKCVTETLELEATREELAAILSDAEQRDNSKVNPELGKTAFDVANIPNNEAVDFCNQALGGYEKRLDYIKNNPLKTVQTIGISLQRLREYKTEGSCR
SRS065278_LANL_scaffold_38430	SRS065278_LANL_scaffold_38430__gene_47198	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS065278_LANL_scaffold_4651	SRS065278_LANL_scaffold_4651__gene_5035	F077404	MNMLKTVFTFFFALCFMMGANSYAQKTDSINAEASERVLNRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPSILFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIIFTNYLVVLGDTYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWIMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRFR
SRS065278_LANL_scaffold_64915	SRS065278_LANL_scaffold_64915__gene_87342	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL