7000000363: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764325968

Overview

Basic Information

• IMG/M Taxon OID: 7000000363
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052907 | Ga0031029
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764325968
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39633796
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F047127	Metagenome	150	N
F054109	Metagenome	140	N
F054111	Metagenome	140	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F067847	Metagenome	125	N
F071327	Metagenome	122	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F101358	Metagenome	102	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1394985	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	761
C1400801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	918
C1407661	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1295
C1408243	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1347
SRS015947_WUGC_scaffold_18065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15064
SRS015947_WUGC_scaffold_18842	All Organisms → cellular organisms → Bacteria	859
SRS015947_WUGC_scaffold_23268	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	20552
SRS015947_WUGC_scaffold_25024	Not Available	78010
SRS015947_WUGC_scaffold_25628	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	969
SRS015947_WUGC_scaffold_26698	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2365
SRS015947_WUGC_scaffold_27263	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	988
SRS015947_WUGC_scaffold_27400	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1734
SRS015947_WUGC_scaffold_28194	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3020
SRS015947_WUGC_scaffold_28234	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2076
SRS015947_WUGC_scaffold_390	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	18698
SRS015947_WUGC_scaffold_5840	All Organisms → Viruses → Predicted Viral	2565

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1394985	C1394985__gene_64616	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGVYSPEFSEVSGFSSLLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG
C1400801	C1400801__gene_67015	F064818	DFMGERKKHPIPNNINGNTPKLYFTKHKFIVVLLPYFTYMNKDEFLKELIAFIADNSSELHPKVFKNKIWFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
C1407661	C1407661__gene_69967	F097490	KMNKKMNVFCKIILPLLCIISCSKRKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSAMTDHGLHHITSEMIKGQMHHKKLDSIVCSVYIWDDICTEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNLFSNSKENKKMYFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C1408243	C1408243__gene_70267	F030786	MKRTRIHKIVFQMLVVMIVTSSLQLLLENGSATKGGNAMGTKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS015947_WUGC_scaffold_18065	SRS015947_WUGC_scaffold_18065__gene_20453	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
SRS015947_WUGC_scaffold_18842	SRS015947_WUGC_scaffold_18842__gene_21470	F054111	ITHEVFLKLIEHLKNLKEFTFLEYIMAPEADIFYFNFMEKTMKIKWDLDYGLSLETKALSTSDKDLFLNILHKEILSLENQ
SRS015947_WUGC_scaffold_23268	SRS015947_WUGC_scaffold_23268__gene_27977	F101360	VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTPQEEAIRDLISTGDISLLEIEGGDA
SRS015947_WUGC_scaffold_25024	SRS015947_WUGC_scaffold_25024__gene_30983	F054109	MIKEKINMTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDLSLSAYINKAVLEKLAHDEKSEA
SRS015947_WUGC_scaffold_25628	SRS015947_WUGC_scaffold_25628__gene_32101	F036281	MITLIKVDEGPVDIYELRMQYLAKLKKTDGVMLPKFIYRNRELFITEFKPTCDDQWIMYLTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRVSDDLKSKFTRHAITNEKGHQTYDWVLKNVEWAADTIRYF
SRS015947_WUGC_scaffold_26698	SRS015947_WUGC_scaffold_26698__gene_34226	F101358	MTEKYSASPAAKEETSAPLPPRQPEYLLTQPIAADGAPQERTPHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWVDVEIITEDGVTLMRMAKPVNRSNIDRLEKCVPLAVLQEQNLDFTNTYLQRAYGMTMKDGRLQPVADAAHATHQNDSTDEQETEVLLAQRDDTHEYLSRDSARQLVGSVAAKASGEVDNSSLVRRALGRVR
SRS015947_WUGC_scaffold_27263	SRS015947_WUGC_scaffold_27263__gene_35415	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
SRS015947_WUGC_scaffold_27400	SRS015947_WUGC_scaffold_27400__gene_35755	F064819	VILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINNIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIKKYK
SRS015947_WUGC_scaffold_28194	SRS015947_WUGC_scaffold_28194__gene_37839	F101358	MTEKHSASLPPRQEHLLTQPITTDGTPKERTTHLDTHIIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDEDGTVLVRMTKPVHRSNIDKLEKCVPLAVLQEQNLDLTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEHQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE
SRS015947_WUGC_scaffold_28234	SRS015947_WUGC_scaffold_28234__gene_37947	F097525	MQQKKIMFKIQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIASVSYDEEPYQLTFSLDDKTLAMIIKELGEAVASFKKE
SRS015947_WUGC_scaffold_390	SRS015947_WUGC_scaffold_390__gene_294	F101360	MSKEDALRRAAVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQVGTVSVSAPAPKYQVVDERALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISTAQAGAIQELIASGDIRMIEVGGD
SRS015947_WUGC_scaffold_5840	SRS015947_WUGC_scaffold_5840__gene_6067	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQAQQDPKYKELDDKLKETELNNL