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Sample 7000000356
7000000356: Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763961826
Overview
Basic Information
IMG/M Taxon OID 7000000356 Open in IMG/M GOLD Reference Gs0063646 | Gp0052900 | Ga0027598 Sample Name Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763961826 Sequencing Status Permanent Draft Sequencing Center Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis Published? N Use Policy Open
Dataset Contents
Total Genome Size 12089589 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes 1 All Organisms → Viruses → Predicted Viral 1 All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Oral Cavity → Attached/Keratinized Gingiva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal surface
Location Information
Location USA: Maryland: Natonal Institute of Health Coordinates Lat. (o ) 39.0042816 Long. (o ) -77.1012173 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F027205 Metagenome 195 N F081456 Metagenome 114 N F101358 Metagenome 102 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link C861125 All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes 1426 Open in IMG/M C862055 All Organisms → Viruses → Predicted Viral 2620 Open in IMG/M SRS019025_WUGC_scaffold_10527 All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium 863 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
C861125 C861125__gene_24888 F081456 LGYRLFLEKGAHMFEEPPIYYVLISLIFLIVFFAISFATWLVWLTNVAFFVKLVITAIGALFAAMTVILYTISAE C862055 C862055__gene_25584 F027205 RTHVASRLIVSADDILRAVKESEEFERKALVEAQKRDRAAGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK SRS019025_WUGC_scaffold_10527 SRS019025_WUGC_scaffold_10527__gene_7339 F101358 IPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE
