7000000354: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764447348

Overview

Basic Information

• IMG/M Taxon OID: 7000000354
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052898 | Ga0027945
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764447348
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50114858
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F047127	Metagenome	150	N
F054109	Metagenome	140	N
F054111	Metagenome	140	N
F055792	Metagenome	138	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F072446	Metagenome	121	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F097525	Metagenome	104	N
F099454	Metagenome	103	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1575552	Not Available	994
C1580224	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1245
C1587784	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2801
SRS015985_WUGC_scaffold_1456	All Organisms → cellular organisms → Bacteria	286016
SRS015985_WUGC_scaffold_1489	All Organisms → cellular organisms → Bacteria	1730
SRS015985_WUGC_scaffold_29011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	4114
SRS015985_WUGC_scaffold_31175	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	930
SRS015985_WUGC_scaffold_31506	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	4625
SRS015985_WUGC_scaffold_33842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2144
SRS015985_WUGC_scaffold_34294	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1102
SRS015985_WUGC_scaffold_34585	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1306
SRS015985_WUGC_scaffold_36263	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1882
SRS015985_WUGC_scaffold_36926	All Organisms → cellular organisms → Bacteria	801
SRS015985_WUGC_scaffold_38149	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1898
SRS015985_WUGC_scaffold_38536	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1240
SRS015985_WUGC_scaffold_38707	All Organisms → cellular organisms → Bacteria	4045
SRS015985_WUGC_scaffold_9044	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens	725

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1575552	C1575552__gene_90591	F072446	KMKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETLARQLHALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYNSGIVTLDCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIER
C1580224	C1580224__gene_92021	F090516	MKSNLSTELFLAFERYFIENDEVISLDKSSEFTDVIAGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYYDLENDAETSDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIEPIPAEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPNEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADF
C1587784	C1587784__gene_94302	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIEGFSQDEAEQIIKFLMNNR
SRS015985_WUGC_scaffold_1456	SRS015985_WUGC_scaffold_1456__gene_1161	F054109	MIKEKINMTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLANDEKSEA
SRS015985_WUGC_scaffold_1489	SRS015985_WUGC_scaffold_1489__gene_1428	F059076	MTNRILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMNILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSATFKMPDPSSGKIVMMRAGNGVIPNVDFGGGKYGVTTAPATVLLTQNGSNWGIYADYPNIGPYEFPSGSTSAGQLVNGKWIITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLQNFLQKLE
SRS015985_WUGC_scaffold_29011	SRS015985_WUGC_scaffold_29011__gene_40697	F047127	MKKTFAFILLIIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGKYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNRK
SRS015985_WUGC_scaffold_31175	SRS015985_WUGC_scaffold_31175__gene_44256	F040685	QVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGASEQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE
SRS015985_WUGC_scaffold_31506	SRS015985_WUGC_scaffold_31506__gene_44785	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRITKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPFTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHAKSHNDPTYDEYLYEISADRSYIKEE
SRS015985_WUGC_scaffold_33842	SRS015985_WUGC_scaffold_33842__gene_48787	F089056	MNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS015985_WUGC_scaffold_34294	SRS015985_WUGC_scaffold_34294__gene_49643	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLAQNASFLANKFLLPSLEAGSVKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS015985_WUGC_scaffold_34585	SRS015985_WUGC_scaffold_34585__gene_50140	F063777	GWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILLENEQFKLKKEDYLPDENSQKYKIFEDFCAKSNEYLDDGYVFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEVAISE
SRS015985_WUGC_scaffold_36263	SRS015985_WUGC_scaffold_36263__gene_53390	F054111	MVFNNLEKESMNKPLDNITHEVFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKIVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ
SRS015985_WUGC_scaffold_36926	SRS015985_WUGC_scaffold_36926__gene_54731	F040149	VADEGAEELRGEMLIEEQGIPVLFVEVEAWYDGRVSSSEILSSVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP
SRS015985_WUGC_scaffold_38149	SRS015985_WUGC_scaffold_38149__gene_57680	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYKGQGITDSYKETVK
SRS015985_WUGC_scaffold_38293	SRS015985_WUGC_scaffold_38293__gene_58108	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVLIDKGDDGTEAGTTWGRYPLETLQKEGNILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAI
SRS015985_WUGC_scaffold_38536	SRS015985_WUGC_scaffold_38536__gene_58953	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKKV
SRS015985_WUGC_scaffold_38707	SRS015985_WUGC_scaffold_38707__gene_59967	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFNYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLKNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK
SRS015985_WUGC_scaffold_9044	SRS015985_WUGC_scaffold_9044__gene_11378	F099454	QRHLVETERIYLYLVSKRTHKPKTHSGIKTLMKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQQKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKIDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK